nucleotides

There are 47 repositories under nucleotides topic.

  • CSBiology/BioFSharp

    Open source bioinformatics and computational biology toolbox written in F#.

    Language:F#107156632

  • Genomicsplc/variantkey

    Numerical Encoding for Human Genetic Variants

    Language:C403757

  • BioJulia/BioSymbols.jl

    Nucleic and amino acid primitive types

    Language:Julia30121314

  • pnnl/mercat

    MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

    Language:Python186011

  • raw-lab/mercat2

    MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

    Language:HTML114101
  • Python-Sars-Cov-2-Mutation-Analysis

    tonygeorge1984/Python-Sars-Cov-2-Mutation-Analysis

    Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib

    Language:Python8318

  • xduan7/bioseq-learning

    deep learning experiments on biological sequences with PyTorch

    Language:Python6201

  • burkesquires/FeaVar

    A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.

    Language:Clarion3180

  • jfkimberly/DXseq

    Produces PDB files from given sequences.

    Language:Python3100

  • zenodeapp/pairwise-alignments

    Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.

    Language:Solidity3142

  • aaiezza/FLiCK

    FLiCK - Format LeveragIng Compression frameworK

    Language:Java2260

  • mutalyzer/backtranslate

    Protein to RNA reverse translation

    Language:Python2341

  • OscBacon/tpe-adn

    A website made for a year-long school project on how store data in DNA, using a nucleotides as our code. The website was made using the Flask framework to incoporate some python programs

    Language:JavaScript2200

  • sarthakkg/GeneFinderFromDNA

    Extracts all of the possible genes from a string of DNA

    Language:Java2100

  • TomMakesThings/Phylogenetic-Tree-Inference

    Inferring likelihood and mutation rate of an evolutionary tree through the Jukes-Cantor model and Felsenstein’s algorithm

    Language:Jupyter Notebook2100

  • 0xnu/nwunsch

    Needleman–Wunsch algorithm implementation in Go.

    Language:Go1100

  • adomingues/filterReads

    Filter alignments on sequence length and/or identity of first nucleotide.

    Language:Python1200

  • balazshorvathreal/MegaVir

    MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.

    Language:R1100

  • dangtunguyen/ThreeDNASequencesAlignment

    Implementation of space-saving three DNA sequences alignment

    Language:Java1100

  • DarkAdin/PythORF

    A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

    Language:Python1100

  • DatDarkAlpaca/shRNA

    shRNA 2.0

    Language:Python110

  • FelixErnst/Modstrings

    :package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

    Language:R1201

  • myon-bioinformatics/search_seq_including_spaces

    Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)

    Language:Python1100

  • PetePrattis/Chimeric-Alignment-problem

    A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

    Language:Python120

  • PetePrattis/chromosome-last-nucleotide-game

    A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.

    Language:Python120

  • PetePrattis/chromosome-last-random-nucleotide-game

    A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.

    Language:Python120

  • r-amaro/DNA-NucleotideScanner

    This C program scans through DNA nucleotides and stores, then prints the 'words' of size 10 along with their locations.

    Language:C1100
  • pngcat-client

    shamseen/pngcat-client

    API repo: https://github.com/shamseen/pngcat-api

    Language:JavaScript11111

  • univieCUBE/genskew

    GenSkew is an application for computing and plotting nucleotide skew data.

    Language:Python1301

  • 0xnu/nwunsch_lua

    Needleman–Wunsch algorithm implementation in Lua.

    Language:Lua0100

  • JanColon/Amino-Acid-Finder

    A tool to find amino acids associated with RNA and DNA nucleotide chains.

    Language:Python0100

  • scbirlab/streq

    🧬 Python utilities for working with nucleotide sequence strings.

    Language:Python0110

  • wennj/pileupReformater

    Convert output from Samtools pileup into a matrix.

    Language:Java0100

  • zhukovanadezhda/dinucleo-freq

    📊🧬 Dinucleotide frequencies in the genome of model organisms 🐁🦠

    Language:Jupyter Notebook0100

  • MoutPessemier/NucleotideMSA-Assignment

    In this assignment, I had to create an application for a team of Bio-Informaticians to work on nucleotide multiple sequence alignments (MSA). The application is a command line application, no GUI is provided.

    Language:Java10

  • taofeekaoyusuf/dna-nucleotide-count-web-app

    This is a web application to count the nucleotides composition in a DNA sequence sample.

    Language:Python10