Chengwei94

Chengwei94's Stars

• charlax/professional-programming

  A collection of learning resources for curious software engineers

  Language:Python46.9k986283.7k

• cookiecutter/cookiecutter

  A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

  Language:Python22.8k2328702k

• diff-usion/Awesome-Diffusion-Models

  A collection of resources and papers on Diffusion Models

  Language:HTML11.3k26848952

• mosaicml/composer

  Supercharge Your Model Training

  Language:Python5.2k49552428

• patrick-kidger/equinox

  Elegant easy-to-use neural networks + scientific computing in JAX. https://docs.kidger.site/equinox/

  Language:Python2.2k25475146

• cjolowicz/cookiecutter-hypermodern-python

  Hypermodern Python Cookiecutter

  Language:Python1.8k23333236

• TezRomacH/python-package-template

  🚀 Your next Python package needs a bleeding-edge project structure.

  Language:Python1.1k826124

• vopani/jaxton

  100 exercises to learn JAX

  Language:Jupyter Notebook57144245

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook520518065

• scverse/squidpy

  Spatial Single Cell Analysis in Python

  Language:Python4481052784

• aristoteleo/dynamo-release

  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

  Language:Python4301026359

• patrick-kidger/lineax

  Linear solvers in JAX and Equinox. https://docs.kidger.site/lineax

  Language:Python378114525

• patrick-kidger/optimistix

  Nonlinear optimisation (root-finding, least squares, ...) in JAX+Equinox. https://docs.kidger.site/optimistix/

  Language:Python35495715

• deepinv/deepinv

  PyTorch library for solving imaging inverse problems using deep learning

  Language:Python351810875

• ModelOriented/modelStudio

  📍 Interactive Studio for Explanatory Model Analysis

  Language:R328218832

• pglira/simpleICP

  Implementations of a rather simple version of the Iterative Closest Point algorithm in various languages.

  Language:Python30273061

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python2231411031

• theislab/sfaira

  data and model repository for single-cell data

  Language:Python135835111

• changwn/scFEA

  single cell Flux Estimation Analysis (scFEA) Try the below web server!

  Language:Jupyter Notebook10816233

• welch-lab/MultiVelo

  Multi-omic velocity inference

  Language:Python10773411

• AlexiaJM/score_sde_fast_sampling

  Repository for the "Gotta Go Fast When Generating Data with Score-Based Models" paper

  Language:Python105568

• vib-singlecell-nf/vsn-pipelines

  A repository of pipelines for single-cell data in Nextflow DSL2

  Language:Nextflow751220432

• AgatheSenellart/MultiVae

  Unifying Multimodal Variational Autoencoders (VAEs) in Pytorch

  Language:Python28215

• BimberLab/cellhashR

  An R package designed to demultiplex cell hashing data

  Language:R274206

• MLO-lab/MuVI

  A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.

  Language:Python27512

• JinmiaoChenLab/DISCOtoolkit

  Language:R25344

• Artur-Galstyan/jaxonloader

  A dataloader, but for JAX

  Language:Python18260

• buettnerlab/pytometry_legacy

  This repository extends scanpy to handle flow and mass cytometry data.

  Language:Jupyter Notebook9211

• JinmiaoChenLab/scTM

  scTM: A package for topic modelling in transcriptomics data

  Language:Python8120

• Vivianstats/PhitestR

  A bioinformatics tool for analyzing the heterogeneity of single-cell populations

  Language:R4120