welch-lab/MultiVelo

Issues

• Subsetting before Multivelo analysis

  #45 opened 4 months ago by Dalhte
  1

• Integrating several samples, vanishing genes :)

  #30 opened 4 months ago by Dalhte
  4

• np.all(nn_cells == adata_atac.obs_names)

  #44 opened 4 months ago by Dalhte
  2

• knn_smooth_chrom error: umap

  #43 opened 5 months ago by bhhlee
  0

• 'SparseCSCView' object has no attribute 'A'

  #42 opened 6 months ago by kalanir
  8

• ZeroDivisionError: division by zero in mv.knn_smooth_chrom

  #26 opened 2 years ago by rdf1993
  5

• multivelo.recover_dynamics_chrom function output .layers[["fit_state']]

  #41 opened 7 months ago by siyao-liu
  3

• Cannot reproduce Fig4a in the SHARE-seq example

  #34 opened 7 months ago by xixi-cathy
  3

• Unpaired RNA and ATAC

  #39 opened a year ago by SITRR
  3

• Error happened in computing velocity stream-- "ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (1, 4) + inhomogeneous part."

  #36 opened a year ago by wenhu0701
  4

• Velocyto .loom file creation

  #38 opened a year ago by AlessiaLeclercq
  1

• cannot read example data 10X_multiome_mouse_brain.loom

  #35 opened a year ago by wenhu0701
  1

• SHARE-seq mouse skin velocyto output

  #33 opened a year ago by chelseabright96
  2

• how to create DTW ?

  #32 opened a year ago by SinghalDivya
  7

• Aggregating peaks returns empty anndata object

  #31 opened a year ago by MoritzTh
  1

• aggregating peaks without 10x feature linkage

  #29 opened a year ago by jhong26
  2

• ValueError: arange: cannot compute length

  #28 opened a year ago by franciskim-yonsei
  7

• Missing cellranger file

  #1 opened 3 years ago by longfeili5170
  5

• cell annotations for HSPC dataset

  #27 opened a year ago by waltno
  1

• Multi-omic

  #25 opened 2 years ago by zhangqc723
  1

• error while calculating latent_time

  #22 opened 2 years ago by SinghalDivya
  17

• Question re: root cells in latent time / velocity streams

  #20 opened 2 years ago by ishahakm
  2

• ModuleNotFoundError: No module named 'importlib.metadata'

  #18 opened 2 years ago by AnaAzambuja
  11

• MultiVelo for multipo samples

  #17 opened 2 years ago by Lei-Guo
  1

• 'multivelo.velocity_embedding_stream' plotting

  #16 opened 2 years ago by WangRong423
  1

• "TypeError...invalid key" during mv.recover_dynamics_chrom()

  #13 opened 2 years ago by anderswe
  2

• Questions about multiple sample analysis

  #4 opened 2 years ago by WangRong423
  4

• Questions about error "arange: cannot compute length"

  #12 opened 2 years ago by WangRong423
  3

• Velocity/pseudotime inconsistencies

  #11 opened 2 years ago by MoLuLuMo
  2

• Multivelo recover_dynamics_chrom function question

  #6 opened 2 years ago by AlMuCan
  3

• Cannot subset using adata_rna = adata_rna[cell_annot.index,:]

  #7 opened 2 years ago by JasonOSS
  5

• Questions about error "cannot compute length" at line 1478.

  #5 opened 3 years ago by Aitar
  5

• How to build GRN

  #3 opened 3 years ago by Dan-121
  2

• import multivelo KeyError

  #2 opened 3 years ago by mossconfuse
  4