ChrisHIV/shiver

Issues

• Inquiry about Using Shiver Software Output for HIV Drug Resistance Prediction

  #22 opened 6 months ago by cvn001
  1

• "alignment" to "global alignment" in global alignment base freqs header

  #3 opened 8 months ago by ChrisHIV
  0

• Simplify deployment - provide Docker container?

  #7 opened 8 months ago by Masterxilo
  2

• Problem aligning

  #19 opened 9 months ago by jsan4christ
  1

• Issue with Initialization using ExampleInput

  #12 opened a year ago by Kurtman85
  4

• Issue with shiver_map_reads.sh - temp_ContaminantReads_1.txt contains reads but 0 in temp_reads1trim2.fastq

  #14 opened a year ago by stephaniemel
  3

• no consensus fasta file produced

  #15 opened a year ago by Wei-Shao
  3

• Shiver for HTLV-1?

  #18 opened a year ago by ammaraziz
  1

• Suggestion to rename FindSeqsInFasta.py within shiver and/or phyloscanner 'tools' folders

  #17 opened a year ago by vera-rykalina
  6

• Problem with read names that end in /1 & /2

  #13 opened 2 years ago by mbyott
  5

• TranslateSeqForGlobalAln.py Error

  #9 opened 6 years ago by MichaelVirology
  2

• Error running with Mafft

  #8 opened 7 years ago by 398jw
  2

• convert python to python3?

  #2 opened 7 years ago by ChrisHIV
  0

• error if too many (contaminant) contigs

  #6 opened 7 years ago by CarlijnB
  5

• Restriction on sequence names?

  #5 opened 7 years ago by sdwfrost
  1

• import of maketrans causing errors

  #4 opened 7 years ago by notestaff
  1

• create a release

  #1 opened 7 years ago by notestaff
  1