MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

Montreal

Pinned Repositories

ConfGF
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Language:Python153 10 934
GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Language:Python249 10 6026
GMNN
Graph Markov Neural Networks
Language:Python394 18 499
graphvite
GraphVite: A General and High-performance Graph Embedding System
Language:C++1.2k 32 112150
KnowledgeGraphEmbedding
Language:Python1.2k 25 54263
LiteratureDL4Graph
A comprehensive collection of recent papers on graph deep learning
3.1k 191 9567
NBFNet
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
Language:Python192 8 1929
RecommenderSystems
Language:Python1.1k 33 22276
torchdrug
A powerful and flexible machine learning platform for drug discovery
Language:Python1.4k 31 220195
ULTRA
A foundation model for knowledge graph reasoning
Language:Python390 9 1655

MilaGraph's Repositories

DeepGraphLearning/torchdrug
A powerful and flexible machine learning platform for drug discovery
Language:Python1.4k 31 220195
DeepGraphLearning/KnowledgeGraphEmbedding
Language:Python1.2k 25 54263
DeepGraphLearning/ULTRA
A foundation model for knowledge graph reasoning
Language:Python390 9 1655
DeepGraphLearning/GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Language:Python249 10 6026
DeepGraphLearning/NBFNet
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
Language:Python192 8 1929
DeepGraphLearning/ConfGF
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Language:Python153 10 934
DeepGraphLearning/AStarNet
Official implementation of A* Networks
Language:Python128 5 513
DeepGraphLearning/RNNLogic
Language:C++118 7 2125
DeepGraphLearning/GNN-QE
Official implementation of Graph Neural Network Query Executor (ICML 2022)
Language:Python87 5 912
DeepGraphLearning/PEER_Benchmark
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
Language:Python75 5 910
DeepGraphLearning/ProtST
[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
Language:Python73 4 128
DeepGraphLearning/GraphLoG
Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).
Language:Python71 8 318
DeepGraphLearning/DiffPack
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Language:Python67 8 75
DeepGraphLearning/ESM-GearNet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
Language:Python55 3 210
DeepGraphLearning/GraphAF
50 9 15
DeepGraphLearning/InductiveQE
Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)
Language:Python46 4 07
DeepGraphLearning/ContinuousGNN
Language:Python42 9 414
DeepGraphLearning/SiamDiff
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Language:Python33 4 44
DeepGraphLearning/SPN
Language:Python29 5 72
DeepGraphLearning/esm-s
Structure-Informed Protein Language Model
Language:Python25 3 33
DeepGraphLearning/CGCF-ConfGen
:test_tube: Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)
Language:Python22 2 05
DeepGraphLearning/torchdrug-site
Website for TorchDrug
Language:SCSS6 7 01
DeepGraphLearning/ultra_torchdrug
A TorchDrug version of ULTRA for reproducibility
Language:Python4 4 02
DeepGraphLearning/torchprotein-site
Website for TorchProtein
Language:SCSS3 3 0
DeepGraphLearning/ConfVAE-ICML21
Language:Python1 2 0
DeepGraphLearning/Math80600A_2021W
Language:Python1 5 0
DeepGraphLearning/Math80600A_2023W
Language:SCSS0 4 00
DeepGraphLearning/DrugTutorial_KDD2021
Language:CSS5 01
DeepGraphLearning/Math80600A_2022W
Language:SCSS2 01
DeepGraphLearning/project
Website for research projects
Language:SCSS11 01