DiltheyLab/HLA-LA

Issues

• Any tutorials for Docker image version?

  #122 opened a month ago by m85976668z
  0

• Integrating new Long-Read Mode into HLA-LA

  #121 opened 2 months ago by mayalevy
  0

• Compilation error with boost 1.85+

  #120 opened 2 months ago by Stikus
  0

• installation

  #119 opened 3 months ago by katahdin0
  0

• only for GRCh38? not Hg19?

  #117 opened 5 months ago by bioinfomatio
  1

• how to support DRB5 allele typing result

  #118 opened 5 months ago by lidd77
  0

• how to use the latet IMGT to create PRG_MHC_GRCh38_withIMGT database from HLA-LA typing tool ?

  #116 opened 6 months ago by lidd77
  0

• how to specify specific IMGT version ?

  #115 opened 6 months ago by lidd77
  1

• the HLA analysis of tumor samples and control samples

  #114 opened 6 months ago by bioinfomatio
  0

• G mean

  #113 opened 6 months ago by bioinfomatio
  0

• Cannot support DRB3/4/5 ?

  #112 opened 6 months ago by lidd77
  0

• [M::bwa_idx_load_from_disk] read 0 ALT contigs - empty sam files

  #110 opened 9 months ago by erah1
  0

• Does it support the typing only based on long-read RNA-seq data?

  #109 opened 9 months ago by yuzhuxuyang
  0

• ont2d not supported by bwa

  #108 opened a year ago by afadda1
  0

• [Help needed] Unable to process a chr6-only BAM file

  #107 opened a year ago by kristineding98
  1

• R_1.fastq and R_2.fastq are empty?

  #106 opened a year ago by scontente
  0

• v1.01 and v1.03

  #105 opened a year ago by bsb2014
  0

• I need samtools >=1.3

  #86 opened 2 years ago by dennis-serum
  2

• Error - [main_samview] fail to read the header from "-".

  #102 opened a year ago by pablosoro
  1

• Proportion of bases with good coverage

  #104 opened a year ago by pmccl027
  0

• How to generate "reference_HLA_ASM.tar.gz" file

  #103 opened a year ago by ddzhang3
  0

• unable to install via conda

  #87 opened 2 years ago by mattzano
  5

• HLA*ASM

  #101 opened a year ago by bsb2014
  1

• Error: no compatible reference specifications

  #100 opened a year ago by pablosoro
  1

• No compatible reference

  #98 opened a year ago by angyonghaseyo
  10

• HLA-LA file format conversion

  #97 opened 2 years ago by Sahu-Mousumi
  3

• Use of uninitialized value $graph in concatenation (.) or string

  #99 opened a year ago by scontente
  0

• v1.0.2 no conda available

  #74 opened a year ago by manolis2023
  5

• Unknown option: action when HLA-LA install by conda

  #71 opened a year ago by rosaricla
  4

• Use of uninitialized value $graph in concatenation

  #78 opened 2 years ago by cathieeee
  1

• Please use only alphanumeric characters for --sampleID

  #93 opened a year ago by serge2016
  3

• Generating the Fasta or fastq for output after alignment to graph

  #80 opened a year ago by obedaram
  2

• Unexpected end of file

  #82 opened 2 years ago by anoronh4
  1

• Getting started with MinIon FASTQ Files

  #77 opened a year ago by fmobegi
  2

• Error: Have found no compatible reference specifications

  #79 opened a year ago by Sahu-Mousumi
  1

• DRB4*03:01N

  #84 opened a year ago by afadda1
  4

• Inconsistent need for hla_nom_g.txt?

  #81 opened a year ago by jfass
  1

• Fail to sterilize graph (Segmentation fault (core dumped))

  #83 opened 2 years ago by hqyone
  1

• error after only use chr6 mapping

  #88 opened a year ago by ksmpooh
  1

• error: Have found no compatible reference specifications

  #89 opened 2 years ago by champa82
  1

• Error with test data

  #85 opened a year ago by mirpedrol
  6

• HLA-LA graph for KIR regions

  #76 opened a year ago by dagkesamanskaya
  1

• Pre-computed index graph

  #72 opened 3 years ago by BioinformaNicks
  1

• No contigs for extraction specified

  #90 opened a year ago by kvaldez
  3

• Does HLA-LA remove duplicate reads first?

  #92 opened 2 years ago by yingchen69
  1

• Error with graphs directory

  #94 opened a year ago by shawez
  1

• Decouple graphs directory with HLA-LA installation

  #96 opened 2 years ago by skchronicles
  1

• haplotypes

  #95 opened a year ago by afadda1
  1

• Error in htx_idx_push

  #91 opened 2 years ago by tessadgreen
  1

• new release for changes since v1.0.1

  #73 opened 2 years ago by dlaehnemann
  1