Issues
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ont2d not supported by bwa
#108 opened by afadda1 - 1
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R_1.fastq and R_2.fastq are empty?
#106 opened by scontente - 0
v1.01 and v1.03
#105 opened by bsb2014 - 2
I need samtools >=1.3
#86 opened by dstephensSD - 1
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Proportion of bases with good coverage
#104 opened by pmccl027 - 0
How to generate "reference_HLA_ASM.tar.gz" file
#103 opened by ddzhang3 - 5
unable to install via conda
#87 opened by mattzano - 1
- 1
Error: no compatible reference specifications
#100 opened by pablosoro - 10
No compatible reference
#98 opened by angyonghaseyo - 10
IMGT version?
#64 opened by serge2016 - 3
HLA-LA file format conversion
#97 opened by Sahu-Mousumi - 11
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extraction file for custom reference
#60 opened by raval91 - 2
- 5
v1.0.2 no conda available
#74 opened by manolis2023 - 1
No longer working for me -- terminate called after throwing an instance of 'std::runtime_error'
#65 opened by cariaso - 1
Do you have HLA-LA* v1.2 pipeline?
#67 opened by PavitaKae - 4
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error for HLA-ASM
#70 opened by hmyh1202 - 1
Use of uninitialized value $graph in concatenation
#78 opened by cathieeee - 3
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Unexpected end of file
#82 opened by anoronh4 - 2
Getting started with MinIon FASTQ Files
#77 opened by fmobegi - 1
- 4
DRB4*03:01N
#84 opened by afadda1 - 1
Inconsistent need for hla_nom_g.txt?
#81 opened by jfass - 1
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error after only use chr6 mapping
#88 opened by ksmpooh - 1
- 6
Error with test data
#85 opened by mirpedrol - 1
HLA-LA graph for KIR regions
#76 opened by dagkesamanskaya - 1
Is it possible to declare multiple CRAM files?
#66 opened by kantale - 1
Pre-computed index graph
#72 opened by BioinformaNicks - 4
- 3
No contigs for extraction specified
#90 opened by kvaldez - 1
Does HLA-LA remove duplicate reads first?
#92 opened by yingchen69 - 1
Error with graphs directory
#94 opened by shawez - 1
- 1
haplotypes
#95 opened by afadda1 - 1
Error in htx_idx_push
#91 opened by tessadgreen - 1
new release for changes since v1.0.1
#73 opened by dlaehnemann - 0
- 1
Picard errors
#62 opened by juliandwillett