DragonWu-R's Stars
icbi-lab/luca
Single-cell Lung Cancer Atlas with 1.2M cells
Huaichao2018/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
FEI38750/MTD
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
biocore/tcga
Microbial analysis in TCGA data
JianGuoZhou3/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
JianGuoZhou3/sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
sridhar0605/training-collection
Collection of bioinformatics training materials
waldronlab/TCGAutils
Toolbox package for organizing and working with TCGA data
LML1qa2ws/TME_Microbiota
IOBR/IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
openbiox/awosome-bioinformatics
A curated list of resources for learning bioinformatics.
lz711/Microbiome
Colorectal cancer microbiome
PierreBSC/Viral-Track
ncrna/PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
biobakery/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
linwang6/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
linwang6/Longitudinal_glioblastoma_paper
marcalva/hcc_sc_2022
HCC single cell analysis for Alvarez, Benhammou et al.
gbouras13/WGS_TCGA_Kraken_Pipeline
Pipeline to Extract Contaminant Reads from TCGA WGS Datasets
ruppinlab/CSI-Microbes-identification
Code for the identification step for CSI-Microbes
knightlab-analyses/mycobiome
Pan-cancer mycobiome atlas
bm2-lab/MUSIC
model-based understanding of single-cell CRISPR screening
sjdlabgroup/SAHMI
BenNolann/rsi_analysis
Calculation of Radiosensitivity Index (RSI) and Genomically-Adjusted Radiotherapy Dose (GARD) with supplementary Differential expression analysis.
ruppinlab/tcga-microbiome-prediction
Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2020), including equivalent models using TCGA RNA-seq gene expression and combined microbial abundance and gene expression for comparison.
dfhoyosg/p53_fitness_tradeoff
Repository for the paper: "A model of mutant p53 fitness defines fundamental trade-offs between oncogenic potential and immunogenicity of tumor-driver mutations".
jessicascarborough/cissig
The public repository including all code to recreate the analysis and figures from, "Exploiting convergent evolution to derive a pan-cancer cisplatin sensitivity gene expression signature."
Chun-Jie-Group/ImmuneTCGA
Immune cell surface gene list in TCGA
askol/DiffExpr_TCGA
Sex Differential Expression Analysis of TCGA datasets
xaitorx/Analysis_JUP_TCGA_CCLE
Analisis of JUP mRNA levels in breast cancer patient datasets (TCGA) and breast cancer cell lines (CCLE)