Edinburgh Genome Foundry

Edinburgh, UK

Pinned Repositories

BandWitch
💫 Computer-aided DNA assembly validation and identification from restriction digests.
Language:Python16 6 00
blabel
:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies
Language:Python162 8 2436
DnaCauldron
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Language:Python49 9 1511
DnaChisel
:pencil2: A versatile DNA sequence optimizer
Language:Python211 10 5337
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Language:Python567 19 7190
DnaWeaver
A route planner for DNA assembly
Language:Python28 6 129
Flametree
:fire: Python file and zip operations made easy
Language:Python148 11 512
pdf_reports
:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug
Language:Python219 15 1939
Primavera
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Language:Python33 10 04
Taskpacker
:school_satchel: Simple schedule optimization library for Python
Language:Python143 17 012

Edinburgh Genome Foundry's Repositories

Edinburgh-Genome-Foundry/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Language:Python567 19 7190
Edinburgh-Genome-Foundry/pdf_reports
:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug
Language:Python219 15 1939
Edinburgh-Genome-Foundry/DnaChisel
:pencil2: A versatile DNA sequence optimizer
Language:Python211 10 5337
Edinburgh-Genome-Foundry/blabel
:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies
Language:Python162 8 2436
Edinburgh-Genome-Foundry/DnaCauldron
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Language:Python49 9 1511
Edinburgh-Genome-Foundry/Plateo
🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more
Language:Python39 8 26
Edinburgh-Genome-Foundry/Geneblocks
:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
Language:Python37 7 73
Edinburgh-Genome-Foundry/Primavera
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Language:Python33 10 04
Edinburgh-Genome-Foundry/crazydoc
Read DNA sequences from colourful Microsoft Word documents
Language:Python31 6 03
Edinburgh-Genome-Foundry/DnaWeaver
A route planner for DNA assembly
Language:Python28 6 129
Edinburgh-Genome-Foundry/Caravagene
🎨 Python library to plot multi-part genetic constructs
Language:Python24 6 02
Edinburgh-Genome-Foundry/genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Language:Python21 4 0
Edinburgh-Genome-Foundry/CUBA
🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Language:Vue19 5 43
Edinburgh-Genome-Foundry/SnapGeneReader
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
Language:Python17 6 05
Edinburgh-Genome-Foundry/BandWitch
💫 Computer-aided DNA assembly validation and identification from restriction digests.
Language:Python16 6 00
Edinburgh-Genome-Foundry/bioprinter
🖨️ Print pictures with living micro-organisms !
Language:Python13 4 34
Edinburgh-Genome-Foundry/GoldenHinges
:link: Short overhangs design for DNA assembly
Language:Python11 9 5
Edinburgh-Genome-Foundry/Sequeduct
Sequencing analysis pipeline
Language:Nextflow10 6 11
Edinburgh-Genome-Foundry/easy_dna
:school_satchel: Python library to read, write, edit DNA sequences
Language:Python7 3 5
Edinburgh-Genome-Foundry/Examples
Collection of Python modules and Jupyter notebook examples
Language:HTML6 4 02
Edinburgh-Genome-Foundry/Sequeduct_demo
Demonstration data for the Sequeduct pipeline
Language:HTML5 3 01
Edinburgh-Genome-Foundry/Ediacara
Python package for interpreting sequencing data of assembled DNA constructs (plasmids)
Language:Python3 5 0
Edinburgh-Genome-Foundry/Polymera
Polymera is a Python package for representing ambiguous sequences written with complement alphabets.
Language:Python3 5 0
Edinburgh-Genome-Foundry/DnaWeaver-online
A web app for DNA Weaver
Language:Vue2 4 0
Edinburgh-Genome-Foundry/OT2Metclo
MSc project
Language:Python2 3 10
Edinburgh-Genome-Foundry/Overhang
Compendium of overhangs
Language:Python2 5 01
Edinburgh-Genome-Foundry/egf-codons-website
:books: Sources of the EGF Codons website, written with Vue.js
Language:Vue1 6 0
Edinburgh-Genome-Foundry/EGF_Docker_Jupyter
Docker Jupyter images with (almost) all EGF packages
Language:Dockerfile1 3 0
Edinburgh-Genome-Foundry/Seq_Report
Simple reporting on a set of sequences for documentation purposes
Language:Python1
Edinburgh-Genome-Foundry/Plater
Package for generating picklist files
Language:Python2 0