Edinburgh Genome Foundry

BandWitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

blabel

:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies

DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

DnaChisel

:pencil2: A versatile DNA sequence optimizer

DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

DnaWeaver

A route planner for DNA assembly

Flametree

:fire: Python file and zip operations made easy

pdf_reports

:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug

Sequeduct

Sequencing analysis pipeline

Taskpacker

:school_satchel: Simple schedule optimization library for Python

Edinburgh-Genome-Foundry/DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Edinburgh-Genome-Foundry/pdf_reports

:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug

Edinburgh-Genome-Foundry/DnaChisel

:pencil2: A versatile DNA sequence optimizer

Edinburgh-Genome-Foundry/blabel

:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies

Edinburgh-Genome-Foundry/DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Edinburgh-Genome-Foundry/Plateo

🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more

Edinburgh-Genome-Foundry/Geneblocks

:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

Edinburgh-Genome-Foundry/crazydoc

Read DNA sequences from colourful Microsoft Word documents

Edinburgh-Genome-Foundry/DnaWeaver

A route planner for DNA assembly

Edinburgh-Genome-Foundry/Caravagene

🎨 Python library to plot multi-part genetic constructs

Edinburgh-Genome-Foundry/genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

Edinburgh-Genome-Foundry/CUBA

🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software

Edinburgh-Genome-Foundry/SnapGeneReader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

Edinburgh-Genome-Foundry/BandWitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

Edinburgh-Genome-Foundry/bioprinter

🖨️ Print pictures with living micro-organisms !

Edinburgh-Genome-Foundry/Sequeduct

Sequencing analysis pipeline

Edinburgh-Genome-Foundry/GoldenHinges

:link: Short overhangs design for DNA assembly

Edinburgh-Genome-Foundry/easy_dna

:school_satchel: Python library to read, write, edit DNA sequences

Edinburgh-Genome-Foundry/Examples

Collection of Python modules and Jupyter notebook examples

Edinburgh-Genome-Foundry/Sequeduct_demo

Demonstration data for the Sequeduct pipeline

Edinburgh-Genome-Foundry/Ediacara

Python package for interpreting sequencing data of assembled DNA constructs (plasmids)

Edinburgh-Genome-Foundry/DnaWeaver-online

A web app for DNA Weaver

Edinburgh-Genome-Foundry/OT2Metclo

MSc project

Edinburgh-Genome-Foundry/Overhang

Compendium of overhangs

Edinburgh-Genome-Foundry/egf-codons-website

:books: Sources of the EGF Codons website, written with Vue.js

Edinburgh-Genome-Foundry/EGF_Docker_Jupyter

Docker Jupyter images with (almost) all EGF packages

Edinburgh-Genome-Foundry/EpiJinn

DNA methylation and restriction

Edinburgh-Genome-Foundry/Mutator

Edinburgh-Genome-Foundry/Seq_Report

Simple reporting on a set of sequences for documentation purposes

Edinburgh-Genome-Foundry/Plater

Package for generating picklist files