Ensembl/VEP_plugins

Issues

• Warning when running ProteinSeqs.pm

  #757 opened 24 days ago by shubham1637
  3

• StructuralVariantOverlap skips all INV matches when same_type=1 used

  #710 opened a month ago by davmlaw
  2

• Plugin 'Phenotypes' went wrong: Can't locate object method "transcript"

  #753 opened a month ago by michaeljon
  4

• SpliceAI Plugin: Masked Scores available?

  #754 opened a month ago by stefandiederich
  1

• ClinPred.pm with GRCh38?

  #719 opened 2 months ago by IanCodes
  3

• FunMotifs: missing annotation

  #725 opened 2 months ago by robertzeibich
  10

• SpliceVault support for GRCh37 ?

  #751 opened 2 months ago by yangyxt
  5

• CADD plugin gives the same score for different alternative alleles？

  #747 opened 2 months ago by Xi-Cao
  7

• Missing ZYG field from VEP output

  #724 opened 2 months ago by IanCodes
  22

• Failed to instantiate plugin UTRannotator

  #737 opened 3 months ago by hachemi23
  11

• Suggestion: Make `transcript_match=1` the default for the dbNSFP plugin

  #740 opened 3 months ago by dvg-p4
  3

• Link for DisGenet Input data not working anymore

  #739 opened 3 months ago by pietrojulia
  1

• Download of dbNSFP4.5c.zip is not working from ftp

  #745 opened 3 months ago by MGCarta
  3

• UTRAnnotator Illegal division by zero

  #742 opened 3 months ago by suzyhh
  5

• Dead link in documentation

  #720 opened 3 months ago by dvg-p4
  1

• Issue: Missing Plugin Columns in INFO Field of VCF File when Using dbNSFP with VEP

  #735 opened 4 months ago by poddarharsh15
  6

• AlphaMissense has "benign" in GRCh37 data files and "likely_benign" in GRCh38

  #668 opened a year ago by davmlaw
  1

• CADD plugin not working as expected in v111

  #703 opened 4 months ago by puva
  4

• Failed to instantiate plugin AncestralAllele

  #736 opened 4 months ago by Mani3bigs
  3

• CSN, GeneSplicer and MaxEntScan plugins do not use default fasta

  #708 opened 4 months ago by davmlaw
  4

• Using dbNSFP4.6_gene.gz as annotation source

  #694 opened 4 months ago by GACGAMA
  1

• UTRAnnotator: Variable names starting with digits

  #733 opened 5 months ago by wwgordon
  6

• UTRAnnotator failed to instantiate

  #718 opened 5 months ago by mmwheel
  3

• Conservation plugin attempts network connection in offline mode

  #731 opened 5 months ago by davidfstein
  9

• no results from mutfunc plugin

  #727 opened 5 months ago by mathob
  8

• MaveDB plugin instructions - GRCh38 only and tabix index file

  #669 opened 7 months ago by davmlaw
  2

• SpliceAI scores

  #692 opened 8 months ago by jml96
  8

• neXtProt values are empty

  #699 opened 8 months ago by MGCarta
  1

• SingleLetterAA plugin not working as expected

  #697 opened 8 months ago by MGCarta
  7

• GWAS Plugin Initialization

  #685 opened 10 months ago by Bobsimonoff
  3

• GWAS plug in Assumptions related to SNPS column

  #684 opened 10 months ago by Bobsimonoff
  3

• dbNSFP plugin only producing empty columns

  #701 opened 10 months ago by Hepit
  4

• CADD can not get any scores

  #698 opened 10 months ago by zyxNo1
  6

• CADD plugin extremely slow with CNVs

  #654 opened a year ago by ntm
  7

• CADD-SV plugin not working

  #667 opened a year ago by kittysher
  7

• MaveDB fields empty

  #665 opened a year ago by dade7
  10

• Plugin Conservation cannot annote GERP score for INDEL correctly

  #678 opened a year ago by jxcao98
  4

• FATHMM-MKL: Failed to compile plugin FATHMM_MKL: Global symbol "$allele" requires explicit package name.

  #676 opened a year ago by JasperBoom
  1

• SpliceAI plugin is not giving the most "severe" result among duplicates

  #638 opened a year ago by lacek
  5

• Plug-in Minimum Version Number is Not Explicitly Stated

  #650 opened a year ago by DarioS
  3

• MaveDB went wrong

  #659 opened a year ago by bwubb
  10

• Empty AlphaMissense annotation

  #660 opened a year ago by bwubb
  3

• Issue with the SingleLetterAA Plugin's Output

  #655 opened a year ago by biofer
  9

• Skipped variant annotations with dbNSFP plugin

  #656 opened a year ago by FrancescaBC
  2

• AlphaMissense plugin available in Docker

  #653 opened a year ago by aiqc
  3

• Software Upgrade Process Problematic on a Multi-user Server

  #651 opened a year ago by DarioS
  2

• Annotation files for spliceAI

  #648 opened a year ago by MGCarta
  3

• alphamissense plugin

  #643 opened a year ago by RosaDeSa
  2

• REVEL plugin not adding score

  #641 opened a year ago by migmarbor
  14

• Use fixed SingleLetterAA plugin in released vep version

  #640 opened a year ago by YeHW
  1