Can't use ldNe on windows
annabarbanti opened this issue · 6 comments
Hi Eric,
I am trying to use the ldNe function in R v 3.6.0, but when I run the code:
>ne <- ldNe(gty, maf.threshold = 0, by.strata = FALSE, ci = 0.95)
I get this error:
Error in mclapply(1:ncol(loc.pairs), compLoc, loc.pairs = loc.pairs, mat = mat, :
'mc.cores' > 1 is not supported on Windows
Is there a way to solve this? Is it a problem of my R version that maybe I can solve?
Thank you very much!
Anna
Are you using the version of strataG from CRAN? If so, would you install the devel version from GitHub? I've done a lot of bug fixes and modifications. This error shouldn't happen in this version.
Yes I was. I tried to install it from GitHub but it gives me this error:
Error: Failed to install 'strataG' from GitHub:
(converted from warning) cannot remove prior installation of package ‘Hmisc’
which is a package I haven't installed, or at least not actively. I tried to remove the package but the program says it doesn't exist in my library.
Hmmm. I'm not sure what you mean by "not actively". The error implies that you have a previous version of Hmisc installed and the strataG installation.
Can you tell me the version number of strataG that you currently have installed?
Ok yes I saw now that Hmisc is a dependency of strataG
the current version of strataG I have installed is "strataG_2.0.2" from CRAN
Looks like deleting the Hmisc before deleting the CRAN version of strataG worked! And looks like the function is working.
Thank you!
Glad to hear it.