Pinned Repositories
ActiveUnetSegmentation
Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.
cbias-napari
Introduction to Napari training course
Etch-a-Cell-Nuclear-Envelope
napari-tutorial
Modular course teaching the use of napari for image visualisation and analysis
network_borg_blog
Network Borg Blog - Resistance is futile *** Blog Edition - Not Maintained! ***
OmeSliCC
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
py-imcyto
IMC segmentation in python.
sparks
TRACERx-PHLEX
Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
warpAnnotations
A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.
The Francis Crick Institute's Repositories
FrancisCrickInstitute/ActiveUnetSegmentation
Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.
FrancisCrickInstitute/warpAnnotations
A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.
FrancisCrickInstitute/napari-tutorial
Modular course teaching the use of napari for image visualisation and analysis
FrancisCrickInstitute/PEACE_melanoma_14_paper
FrancisCrickInstitute/Network_Automation_with_Nornir
Network Automation with Nornir
FrancisCrickInstitute/plateplot
Python library for plotting microtitre plates in altair / vega-lite
FrancisCrickInstitute/protocolBLAST
Sample preparation and warping accuracy for correlative multimodal imaging in the mouse olfactory bulb using two-photon, synchrotron X-ray and volume electron microscopy
FrancisCrickInstitute/RAS84
Analysis code associated with the development of RAS84, a curated RAS transcriptional signature.
FrancisCrickInstitute/babs-pre-quarto
Pre-processor to produce parametrised Quarto websites
FrancisCrickInstitute/DESdemonA
BABS template R script for processing bulk RNASeq data
FrancisCrickInstitute/dm3d-pages
Deforming mesh 3D usage.
FrancisCrickInstitute/Electronics-Course-Material
Examples and course material
FrancisCrickInstitute/MSTPump
Open source syringe pump
FrancisCrickInstitute/RAS84_classification
R script to classify lung adenocarcinoma transcriptomes using RAS84 transcriptional signature SVM.
FrancisCrickInstitute/Spherical_treadmill
FrancisCrickInstitute/Tetrode_plater_breakout_board
FrancisCrickInstitute/vhl_snRNAseq
Analysis code for VHL tumour snRNAseq datasets from TRACERx renal
FrancisCrickInstitute/op17_adjusted_ABC
Adjusted steps for the Activity-by-Contact (ABC) algorithm.
FrancisCrickInstitute/3D-printable-translational-stage-Light-Sheet-Microscope
FrancisCrickInstitute/Behavioural_board
FrancisCrickInstitute/CohesinModel
FrancisCrickInstitute/Cryopup
A low-cost device for cryoanaesthesia of neonate rodents
FrancisCrickInstitute/Custom-agarose-gel-casting-device
FrancisCrickInstitute/devopsobjectives
Github Team Objectives
FrancisCrickInstitute/Embryo-micro-injection-chamber
Mould to build a PDMS vessel for embryo micro-manipulation/imaging
FrancisCrickInstitute/LCD-screen-Backlight-LED-External-control-circuit
Circuit to control the flickering frequency of LCD displays with an external signal
FrancisCrickInstitute/Perfusion_system
FrancisCrickInstitute/SC21030_OP_ASCL1ko
scRNA-seq analysis project for neurally differentiated wildtype and ASCL1-KO human iPSCs, in the presence of NOTCH inhibitor DAPT
FrancisCrickInstitute/simple-segmentor
FrancisCrickInstitute/TRE_off_snowflake_computing
Repo to replicate a TRE environment using snowflake