Pinned Repositories
ActiveUnetSegmentation
Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.
cbias-napari
Introduction to Napari training course
Etch-a-Cell-Nuclear-Envelope
napari-tutorial
Modular course teaching the use of napari for image visualisation and analysis
network_borg_blog
Network Borg Blog - Resistance is futile *** Blog Edition - Not Maintained! ***
OmeSliCC
Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
py-imcyto
IMC segmentation in python.
sparks
TRACERx-PHLEX
Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
warpAnnotations
A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.
The Francis Crick Institute's Repositories
FrancisCrickInstitute/BABS-Docs
Document repository maintained by BABS
FrancisCrickInstitute/crick-emstp
Software developed in the electron microscopy science technology platform
FrancisCrickInstitute/cbioportal
cBioPortal for Cancer Genomics
FrancisCrickInstitute/cbioportal-frontend
React Frontend of cBioPortal :tada:
FrancisCrickInstitute/crick-emstp-miniLM
Control software for ultraLM and miniLM microscopes developed in the EM STP
FrancisCrickInstitute/HPC_STORM
Scripts for running ThunderSTORM at the Francis Crick Institute's CAMP HPC
FrancisCrickInstitute/Phenix_HCS_Imagestitcher
This is a data-science pipeline that allows for stitching/mosaic'ing of images collected from a PerkinElmer HCS such as Phenix so that you can start interrogating your macroscale data
FrancisCrickInstitute/phy-contrib
[This repository is archived, will be deprecated after the release of phy 2.0]
FrancisCrickInstitute/Q2019