Pinned Repositories
bcalm
compacted de Bruijn graph construction in low memory
bloocoo
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.
DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
dsk
k-mer counting software
gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
gatb-minia-pipeline
GATB Minia assembly pipeline
MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
minia
Minia is a short-read assembler based on a de Bruijn graph
pyGATB
Python3 wrapper for GATB-Core.
simka
Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
GATB's Repositories
GATB/bcalm
compacted de Bruijn graph construction in low memory
GATB/minia
Minia is a short-read assembler based on a de Bruijn graph
GATB/gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
GATB/simka
Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
GATB/DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
GATB/dsk
k-mer counting software
GATB/MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
GATB/gatb-minia-pipeline
GATB Minia assembly pipeline
GATB/bloocoo
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.
GATB/pyGATB
Python3 wrapper for GATB-Core.
GATB/short_read_connector
Short Read Connector (SRC)
GATB/leon
Leon - FASTA and FASTQ read compressor
GATB/TakeABreak
TakeABreak detects inversion breakpoints in read datasets without a reference genome
GATB/gatb-tools-machine
Build a single Docker image containing all GATB-Tools ready to be used. This is an official repository, not a mirror.
GATB/tigops
Manipulation of unitigs and contigs
GATB/gatb-core-tuto
This project hosts the source code of the GATB-Core Programming Online Tutorial.
GATB/github-release-api
A script to facilitate the use of Github Release API v3