GATB/DiscoSnp

Issues

• problem running disco snp

  #19 opened 3 years ago by Kedraous
  8

• Nucleotide diversity from DiscoSnp

  #41 opened a year ago by clorenzo1
  2

• Equivalent information between discosnp and STACKS2

  #38 opened a year ago by clorenzo1
  8

• Unable to open VCF file in IGV - SAMPLE metainformation line

  #39 opened a year ago by kbseah
  3

• Trouble filtering with vcftools

  #37 opened 2 years ago by clorenzo1
  2

• error: there was a problem with readFileName Dumping

  #36 opened 2 years ago by clorenzo1
  2

• error: there was a problem with readFileName Dumping

  #35 opened 2 years ago by clorenzo1
  3

• Problem with VCF creation: an error occurred in determining the filter of close snps (an unmapped SNP is "PASS")

  #32 opened 2 years ago by JaredYoung261
  3

• Multiple reference alleles output

  #34 opened 2 years ago by githubgig
  3

• EXCEPTION: cannot open ./trashme_3684_dsk_partitions_gatb/parts.360

  #31 opened 2 years ago by githubgig
  4

• Call to python 2 in run_discoSNP++.sh

  #30 opened 2 years ago by AxVE
  2

• Problem running discoSnpRad

  #29 opened 2 years ago by bifenggang-star
  4

• Options for .vcf filtering

  #28 opened 2 years ago by githubgig
  1

• Type of Variant (Ty) format error in .vcf

  #27 opened 2 years ago by githubgig
  1

• DiscoSnp VCF record; Ref allele does not match Assembly Used

  #26 opened 3 years ago by robertwhbaldwin
  8

• Requires python3 but calls python2

  #23 opened 3 years ago by AxVE
  1

• Mixing of 0-based and 1-based position in the outputed vcf file of DiscoSNP++

  #21 opened 3 years ago by jdalino
  6

• SNP ID in VCF file with reference genome

  #18 opened 3 years ago by stefanerb89
  3

• discoSnpRAD and short_read_connector

  #17 opened 3 years ago by joannarifkin
  4

• Distinguishing inherited variants from de novo variants

  #12 opened 3 years ago by standage
  1

• comparison between pointer and zero

  #9 opened 3 years ago by NadiyaSitdykova
  1

• VCF with mapping and reference genome nucleotide

  #8 opened 3 years ago by pierrepeterlongo
  0

• vcf for IGV wont load in IGV

  #3 opened 3 years ago by cfblaeb
  1

• New release needed

  #13 opened 3 years ago by coolkom
  8

• QUESTION- Is it possible to re-start a run?

  #16 opened 3 years ago by CraigMichell
  2

• compatibility with HiFi reads

  #20 opened 3 years ago by dabitz
  3

• Using Disco SNP to find sex markers; calling on a cohort with males and females

  #22 opened 3 years ago by robertwhbaldwin
  1

• "PCR duplicates" should be removed when using discoSNP++, while detected by BWA

  #2 opened 3 years ago by pierrepeterlongo
  0

• Error parsing sam input in VCF_creator.py

  #7 opened 6 years ago by mikheyev
  3

• ```Number=0/1``` invalid vcf?

  #11 opened 6 years ago by nikostr
  1