GATB/simka

Issues

• simple test stuck

  #31 opened a year ago by Andreas-Bio
  0

• Reuse simka merge data on subset of samples

  #30 opened a year ago by Rridley7
  2

• Paired reads input file outputting duplicate rows

  #29 opened 2 years ago by Rridley7
  1

• multifasta file as input

  #27 opened 2 years ago by lmanchon
  1

• Simka k-mers frequencies table

  #28 opened 2 years ago by Luponsky
  2

• convert output matrix to triangular format in R

  #26 opened 2 years ago by TonyMane
  1

• simple test stuck

  #25 opened 3 years ago by lalalagartija
  1

• Installs hdf headers

  #24 opened 3 years ago by yurivict
  0

• Include <hdf5/hdf5.h> is wrong, hdf5.h is installed into ${PREFIX}/include/hdf5.h

  #23 opened 3 years ago by yurivict
  0

• Several plist problems: It installs the third party executable 'h5cc', etc.

  #22 opened 3 years ago by yurivict
  0

• -max-reads 0

  #21 opened 3 years ago by rotheconrad
  0

• test scripts hang with high cores count

  #20 opened 3 years ago by emollier
  0

• Add option to trim all reads to a given length

  #19 opened 3 years ago by fplazaonate
  1

• Can't open object can't open my reads

  #18 opened 3 years ago by FengqingWang0712
  6

• simka crashes with empty files

  #17 opened 3 years ago by fplazaonate
  1

• Bioconda package

  #5 opened 3 years ago by muslih14
  7

• run does not finish

  #9 opened 5 years ago by palomo11
  1

• .fastq.gz support

  #14 opened 4 years ago by jianshu93
  1

• SimkaMin output file symmetry

  #16 opened 4 years ago by hjruscheweyh
  2

• run for multiple samples on different node on super computer

  #15 opened 4 years ago by jianshu93
  0

• Test regression on Arm64 (Debian Med)

  #13 opened 4 years ago by shayandoust
  0

• Job does not end

  #10 opened 4 years ago by martialbriand
  8

• Issue with test_simkaMin.py

  #12 opened 5 years ago by shayandoust
  2

• Issues during linking stage

  #11 opened 5 years ago by shayandoust
  4

• Which kmers are used?

  #7 opened 5 years ago by ctseto
  4

• Visualising subsample of simka results

  #6 opened 6 years ago by ggerogiokas
  0

• Inches

  #4 opened 7 years ago by aghozlane
  1

• Cannot compile source archive from release page

  #3 opened 7 years ago by pbordron
  0

• Fails to run

  #2 opened 7 years ago by raw937
  16

• Rscripts fail to generate heatmap images

  #1 opened 8 years ago by aghozlane
  3