GDKO/AvP

Issues

• Question about avp prepare output

  #25 opened 2 months ago by bheimbu
  23

• how is the tree made after classification

  #24 opened 4 months ago by lagphase
  3

• taxonomy_nexus.txt file empty

  #17 opened 4 months ago by mgarl-10
  7

• HI, i wanna know whats the meaning of "Ingroup" and "EGP"

  #23 opened 4 months ago by leech1225
  8

• AttributeError: 'str' object has no attribute 'append'

  #21 opened 4 months ago by wangzefei446
  5

• Error parsing GFF3 file for AvP hgt local score analysis

  #13 opened 4 months ago by aldendirks
  10

• Error running avp detect: IndexError: list index out of range

  #22 opened 5 months ago by bheimbu
  0

• Error: invalid taxonomic rank:

  #20 opened 7 months ago by coles5
  0

• `avp evaluate` runs forever with no progress

  #19 opened 7 months ago by bheimbu
  10

• how to infer donor species according to result file named fasttree_tree_results.txt_k5.prox.txt

  #12 opened 10 months ago by njliangdong
  3

• I don't want to exclude any species.

  #15 opened 10 months ago by maruiqi0710
  3

• Clarification on HGT call

  #16 opened a year ago by bshrestha0
  6

• Evaluating intrakingdom HGT and adding lower toxonomic ranks to classification.txt

  #14 opened a year ago by aldendirks
  4

• something wrong when using diamond with nr database

  #11 opened a year ago by Kenlly369
  4

• calculate ai output file empty

  #10 opened a year ago by mgarl-10
  10

• Database download error [Swissprot]

  #9 opened 2 years ago by byeollee
  2

• Error running classify, IndexError: list index out of range

  #7 opened 2 years ago by pyongheng
  8

• AvP AI index different from Alienness

  #8 opened 2 years ago by lyy005
  3

• HGT candidates in M.incognita

  #6 opened 2 years ago by csxie-666
  4

• TypeError: can only concatenate str (not "list") to str

  #2 opened 2 years ago by CongLiu37
  1

• UnicodeDecodeError: 'utf-8' codec can't decode byte 0xee in position 2: invalid continuation byte

  #5 opened 2 years ago by alexvasilikop
  4

• Cannot run program AvP - Uniref database in configuration file

  #4 opened 2 years ago by alexvasilikop
  1

• acc2taxid.py with uniref50 - ValueError: not enough values to unpack (expected 2, got 1)

  #3 opened 2 years ago by alexvasilikop
  1

• UnboundLocalError: local variable 'query_hit_id' referenced before assignment

  #1 opened 2 years ago by CongLiu37
  1