GangLiTarheel's Stars
probml/pyprobml
Python code for "Probabilistic Machine learning" book by Kevin Murphy
trapd00r/LS_COLORS
A collection of LS_COLORS definitions; needs your contribution!
mikelove/awesome-multi-omics
List of software packages for multi-omics analysis
ryansmcgee/seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
OmicsML/awesome-deep-learning-single-cell-papers
jmschrei/apricot
apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.readthedocs.io/en/latest/index.html
KrishnaswamyLab/PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
cole-trapnell-lab/monocle3
stuart-lab/signac
R toolkit for the analysis of single-cell chromatin data
WaterKnight1998/SemTorch
Teichlab/bbknn
Batch balanced KNN
TorchUQ/torchuq
A library for uncertainty quantification based on PyTorch
ShengjiaZhao/MMD-Variational-Autoencoder
OmicsML/awesome-foundation-model-single-cell-papers
lnsmith54/hyperParam1
KrishnaswamyLab/SingleCellWorkshop
jzhoulab/orca
sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
Varunram/Awesome-Regex-Resources
A curated list of Regex Resources. Inspired by other awesome stuff
stanleyn/Comp790-166-Comp-Bio
Computational Biology- Spring 2021
softmin/ReHLine-SVM
A tiny and header-only C++ library aiming to be the fastest linear SVM solver.
open2c/cooler-binder
Cooler demo using a Jupyter notebook Binder
mehta-lab/dynamorph
Learn morphological states of dynamic cells
igvteam/spacewalk
SpaceWalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
google-research/large_scale_mmdma
yixuan/markerpen
Marker Gene Detection via Penalized Principal Component Analysis
GangLiTarheel/DeepGWAS
andrewhill157/easygrid
Simple tool for pipelining commands on Grid Engine platforms with basic dependencies and job monitoring.
bethmartin/sci-RNA-seq3_pipeline
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
FowlerLab/vcs_2019
Code and processed data for manuscript entitled, "High-throughput, Microscope-based Sorting to Dissect Cellular Heterogeneity"
Noble-Lab/ALSO