Pinned Repositories
AnnoPred
Genetic risk prediction integrating LD and functional annotations
bfGWAS
single class model
biotools
A list of useful bioinformatics resources
BoxPlotR.shiny
shiny application to generate box plots with R
burden_testing
A collection of scripts to run genome-wide burden testing using MONSTER.
CTPR
CTPR software
FM-pipeline
FineMapping analysis using GWAS summary statistics
fusion_twas
methods for functional summary-based imputation
gwas
Scripts for GWAS association and metaanalysis
locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
GeneticResources's Repositories
GeneticResources/GWASpy
GeneticResources/nps
Non-Parametric Shrinkage (NPS)
GeneticResources/pyprobml
Python code for "Probabilistic Machine learning" book by Kevin Murphy
GeneticResources/AD_finemap
Code supporting analyses in paper on fine-mapping AD loci
GeneticResources/anndata
Annotated data.
GeneticResources/bGWAS
R package to perform Bayesian Genome-Wide Association Studies
GeneticResources/fastenloc
Colocalization analysis of genetic association signals
GeneticResources/Giotto
Single-cell spatial analysis toolbox
GeneticResources/gnomad_qc
GeneticResources/gwasglue
Linking GWAS data to analytical tools in R
GeneticResources/MAST
Tools and methods for analysis of single cell assay data in R
GeneticResources/metaboprep
a pipeline of metabolomics data processing and quality control
GeneticResources/MVMR
MVMR R Package
GeneticResources/ncem
Learning cell communication from spatial graphs of cells
GeneticResources/picopili
Fork of ricopili for development of pipeline for family-based data
GeneticResources/pleio
GeneticResources/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
GeneticResources/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
GeneticResources/regexcite
PACKAGE EXISTS FOR DEMONSTRATION PURPOSES ONLY! Make Regular Expressions More Exciting
GeneticResources/rlang
Low-level API for programming with R
GeneticResources/RNA-SEQ
GeneticResources/seurat-object
GeneticResources/signac
R toolkit for the analysis of single-cell chromatin data
GeneticResources/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
GeneticResources/skimr
A frictionless, pipeable approach to dealing with summary statistics
GeneticResources/slideseq-tools
Tools for analyzing Slide-seq data
GeneticResources/SPACox
GWAS for survival analysis in large cohorts
GeneticResources/SpatialExperiment
GeneticResources/squidpy
Spatial Single Cell Analysis in Python
GeneticResources/Tangram
Spatial alignment of single cell transcriptomic data.