Gilles86's Stars
CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
ycm-core/YouCompleteMe
A code-completion engine for Vim
pymc-devs/pymc
Bayesian Modeling and Probabilistic Programming in Python
anishathalye/dotbot
A tool that bootstraps your dotfiles ⚡️
bambinos/bambi
BAyesian Model-Building Interface (Bambi) in Python.
ANTsX/ANTsPy
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
uwescience/shablona
A template for small scientific python projects
seanfisk/python-project-template
A template Python project with a focus on best practices.
nipy/nipy
Neuroimaging in Python FMRI analysis package
hddm-devs/hddm
HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).
noahbenson/neuropythy
A neuroscience library for Python, intended to complement the existing nibabel library.
ofgulban/segmentator
3D MRI data exploration and segmentation tool.
nighres/nighres
Processing tools for high-resolution neuroimaging
mwaskom/lyman
Data pipelines and analysis library for functional MRI
PeerHerholz/BIDSonym
a BIDS app for pseudo-anonymization of neuroimaging data
bids-apps/freesurfer
BIDS app wrapping recon-all from FreeSurfer
ihrke/IPythonQL
Quicklook plugin for ipython notebooks
kwagstyl/surface_tools
Tools for mesh surface-based operations
fnoble/python-progressbar
Clone of python-progressbar
cfriedline/remote_ikernel
fabianp/hrf_estimation
HRF estimation
Gilles86/braincoder
Encoding models for fMRI implemented in tensorflow
bids-standard/bep001
Project management repository (primarily issues) for BIDS Extension Proposal 001
VU-Cog-Sci/prfpy
prf fitting routines at Spinoza Centre for Neuroimaging
lukassnoek/scanphyslog2bids
Code to convert Philips physiology files ("SCANPHYSLOG") to the BIDS-format, including (estimated) volume triggers.
twiecki/stopsignal
Hierarchical stop-signal model (Matzke et al, 2011) that allows estimation of SSRT and SSRT variability.
noio/jsrl
Interactive Reinforcement Learning in JavaScript
Gilles86/in_limbo
A Python module to analyze fMRI data using the 'in limbo'-approach and sandwich estimators
noio/nukkies
woof
davhunt/surface_tools
Computes n equally spaced offset surfaces between the white and pial surfaces with equal ratios between areas of successive surfaces, which samples the same layers in gyri and sulci.