falcon kit version
ttian627 opened this issue · 6 comments
ttian627 commented
Hello,
Where can I install the corresponding falcon kit? I can not find falcon-kit v0.7 now.
aseetharam commented
Hi @ttian627:
Thanks for getting in touch. If you are running Falcon on your assembly, we highly recommend that you use the latest version of the assembler as they have many bug fixes. If you are trying to replicate the results, then you can get the previous versions of this assembler from this link. Note that the Falcon assembler is also called as pb-assembly
and their corresponding versions are listed here.
ttian627 commented
OK, thank you!
At 2022-02-16 22:31:56, "Arun Seetharam" ***@***.***> wrote:
Hi @ttian627:
Thanks for getting in touch. If you are running Falcon on your assembly, we highly recommend that you use the latest version of the assembler as they have many bug fixes. If you are trying to replicate the results, then you can get the previous versions of this assembler from this link. Note that the Falcon assembler is also called as pb-assembly and their corresponding versions are listed here.
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ttian627 commented
Hello,
When I used the pb-assembly,it seems can not skip the repeat mask step with the setting "pa_HPCTANmask_option= pa_REPmask_code=0,300;0,300;0,300". Is it right?
Thank you
Tian
At 2022-02-16 22:31:56, "Arun Seetharam" ***@***.***> wrote:
Hi @ttian627:
Thanks for getting in touch. If you are running Falcon on your assembly, we highly recommend that you use the latest version of the assembler as they have many bug fixes. If you are trying to replicate the results, then you can get the previous versions of this assembler from this link. Note that the Falcon assembler is also called as pb-assembly and their corresponding versions are listed here.
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aseetharam commented
ttian627 commented
Hello,
When I set the "seed_coverage=50, length_cutoff = -1" , FALCON will auto compute the cutoff. The cutoff up to 20kb, but the cns reads were only 20X at my 198G CLR data. I find the "-H10310" at "pa_HPCdaligner_option" will not effective. Should I need set the "length_cutoff = 10000" or change to a bigger seed coverage?
Thank you!
Tian
At 2022-02-18 07:37:18, "Arun Seetharam" ***@***.***> wrote:
Closed #14.
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aseetharam commented
Sorry, @ttian627, can't be of much help here.
Thanks,