INCATools/dosdp-tools

Issues

• Support 0-many var input

  #334 opened 3 months ago by hkir-dev
  4

• Literals with language tag support in DOSDP templates

  #494 opened 5 months ago by OliverHex
  3

• Add a parameter --no-match-no-export

  #483 opened 9 months ago by matentzn
  0

• Provide a way to define labels with regular expression replacement patterns

  #476 opened a year ago by matentzn
  1

• Support line commenting with '#'

  #451 opened 2 years ago by matentzn
  2

• Add option for dosdp generate to enable using synonyms for label generation

  #246 opened 4 years ago by matentzn
  3

• Redundant missing column message if table is empty

  #429 opened 2 years ago by bvarner-ebi
  0

• Problem with adding ORCIDs as data_list_vars

  #418 opened 2 years ago by rays22
  14

• 'terms' command fails if object property used as a variable

  #417 opened 2 years ago by Clare72
  4

• Missing column warnings should include pattern names

  #389 opened 2 years ago by matentzn
  2

• Dosdp prototype fails silently when no pattern_iri

  #410 opened 2 years ago by matentzn
  0

• When generating definitions/syns, and multiple labels are present, dosdp tools create weird values.

  #412 opened 2 years ago by matentzn
  4

• IRI value annotations are dropped

  #404 opened 3 years ago by balhoff
  1

• query performance regression in v0.19

  #402 opened 3 years ago by balhoff
  1

• warning/fail on dosdp prototype should name file

  #387 opened 3 years ago by dosumis
  0

• How to print dosdp tools version?

  #388 opened 3 years ago by matentzn
  1

• Add check for when an obsolete term is used in a pattern

  #372 opened 3 years ago by cmungall
  1

• docs index should be alphabetized

  #362 opened 3 years ago by balhoff
  0

• DOSPT batch mode should have a nice message when pattern is missing

  #207 opened 3 years ago by matentzn
  2

• query --print_query behavior is confusing

  #358 opened 3 years ago by cmungall
  0

• When a tsv or yaml is not found, dont print stack trace

  #299 opened 3 years ago by matentzn
  3

• Output a pattern conformance report as RDF for a batch query run

  #364 opened 3 years ago by balhoff
  0

• Produce more informative errors messages when owlapi fails to parse manchester

  #347 opened 3 years ago by ramonawalls
  2

• Help figuring out how to run dosdp-tools

  #338 opened 3 years ago by ramonawalls
  7

• Weird exception for an (as of yet) unknown reason

  #339 opened 3 years ago by matentzn
  4

• Logical axiom IRI resolution issue

  #311 opened 4 years ago by hkir-dev
  3

• Dealing with nominals and data values

  #305 opened 4 years ago by matentzn
  1

• Hide "gzip" logging

  #243 opened 4 years ago by matentzn
  0

• Coordinate the handling of escape character with DOSDP spec

  #247 opened 4 years ago by matentzn
  1

• investigate excessive memory usage

  #274 opened 4 years ago by balhoff
  4

• new annotation matching features fails in one case

  #284 opened 4 years ago by matentzn
  6

• build triples model for batch query only once

  #273 opened 4 years ago by balhoff
  1

• Feature request: Trim whitespace around cell values in TSV

  #230 opened 4 years ago by matentzn
  2

• Add option to flush out CURIEs rather than IRIs

  #245 opened 4 years ago by matentzn
  1

• DOSDP tools seems to consume too much memory in bulk mode

  #240 opened 4 years ago by matentzn
  2

• Debugging: catch exceptions and name pattern when in batch mode

  #244 opened 4 years ago by matentzn
  0

• Memory issues in Bulk generation mode

  #227 opened 4 years ago by matentzn
  2

• Documentation request: how to overwrite generated columns

  #211 opened 5 years ago by matentzn
  2

• Feature request: --strict-vars true

  #208 opened 5 years ago by matentzn
  0

• DOSDPT reports missing columns when missing values

  #205 opened 5 years ago by matentzn
  0

• 0.14 Beta fails to read Manchester Syntax

  #199 opened 5 years ago by matentzn
  2

• Batch processing mode

  #193 opened 5 years ago by matentzn
  0

• Cant use owl Thing IRI in TSV

  #154 opened 5 years ago by matentzn
  0

• Illegal reflective access warning

  #173 opened 5 years ago by wdduncan
  1

• Q: How can I refer to facet restrictions in OWL class expression?

  #142 opened 5 years ago by matentzn
  1

• Error when trying to match unions

  #138 opened 5 years ago by matentzn
  1

• Q: When running DOSDP query, can entity_label columns be populated?

  #147 opened 5 years ago by matentzn
  0

• Add a diff command

  #141 opened 5 years ago by cmungall
  0

• Unclear manchester syntax error reporting

  #140 opened 5 years ago by cmungall
  0

• query fails to recognize patterns with repeated elements

  #139 opened 5 years ago by cmungall
  0