JeremyNiu

JeremyNiu's Stars

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k748k918

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Python71448538268

• wanderlust/wanderlust

  Wanderlust Development Repository

  Language:Emacs Lisp4004216746

• RGLab/MAST

  Tools and methods for analysis of single cell assay data in R

  Language:R2281017957

• GGiecold-zz/Cluster_Ensembles

  A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.

  Language:C69131844

• HadoopGenomics/Hadoop-BAM

  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

  Language:Java69189552

• linnarsson-lab/BackSPIN

  Biclustering algorithm

  Language:Python5614921

• nolanlab/spade

  SPADE: Spanning Tree Progression of Density Normalized Events

  Language:R482214523

• diazlab/scell

  Single-CELL rna-seq analysis software

  Language:MATLAB386111

• lanjiangboston/GiniClust

  GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index

  Language:R367517

• nolanlab/citrus

  Citrus Development Code

  Language:R311912920

• nolanlab/cytofCore

  R package for working with CyToF data

  Language:R26181315

• nolanlab/Rclusterpp

  Memory efficient clustering in R for large datasets

  Language:C++2061211

• GGiecold-zz/ECLAIR

  Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.

  Language:Python14524

• gcyuan/SCUBA

  Language:MATLAB11489

• nolanlab/cytospade

  Cytoscape plugin for SPADE

  Language:Java10141510

• GGiecold-zz/PySCUBA

  Python for Single-cell Clustering Using Bifurcation Analysis

  Language:Python8104

• nolanlab/single-cell-debarcoder

  deconvolution of barcoded CyTOF data

  Language:MATLAB74123

• gcyuan/ECLAIR

  Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.

  Language:Python3100

• gcyuan/PySCUBA

  Python for Single-cell Clustering Using Bifurcation Analysis

  Language:Python3102

• taoliu/bam2x

  extract information from bam (sequence alignment) files and generate tables for further analysis.

  Language:Python2301

• gcyuan/GiniClust

  GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index

  Language:R1100