Jun-Lizst

Molecular engineer interested in cell biology and neurobiology questions;

Institute of Organic Chemistry and Biochemistry (IOCB)Prague, Czech republic

Pinned Repositories

3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
Language:OpenSCAD1 0 00
3Dscript
Language:Java1 0 00
BMAv1-Brain-Metabolome-Atlas
Language:R1 1 00
HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
Language:R4 0 03
leo1234j_website
personal blog of Junliszt
Language:HTML1 1 00
leo1234jv4
Language:HTML1 1 00
MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
Language:R3 0 06
ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
Language:R3 0 00
sleepr
Sleep analysis with R.
Language:R2 1 00
TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
Language:Shell2 0 01

Jun-Lizst's Repositories

Jun-Lizst/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
Language:R1 0 00
Jun-Lizst/cell-locator
manually align specimens to annotated 3D spaces
Language:Python1 0 0
Jun-Lizst/FragGenie
1
Jun-Lizst/GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
Language:R1 0 0
Jun-Lizst/hugo-lithium
Lithium - A simple responsive Hugo theme
Language:HTML1 0 0
Jun-Lizst/Metaboseek
Interactive software to analyze and browse mass spectrometry data
Language:R1 0 0
Jun-Lizst/MicronsBinder
A collection of notebooks to provide examples of using Microns-explorer.org datasets
Language:Jupyter Notebook1 0 0
Jun-Lizst/msms_rt_ssvm
Implementation of the LC-MS²Struct model published in the manuscript "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data" by Bach et al.
Language:Python1 0 0
Jun-Lizst/openfold
Trainable PyTorch reproduction of AlphaFold 2
Language:Python1 0 0
Jun-Lizst/pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
Language:C1 0 0
Jun-Lizst/ROpenCVLite
Utility package to install OpenCV in R
Language:CMake1 0 0
Jun-Lizst/SNT
The ImageJ framework for semi-automated tracing and analysis of neurons
Language:Java1 0 0
Jun-Lizst/tidytuesday
Official repo for the #tidytuesday project
Language:HTML1 0 0
Jun-Lizst/AraCLIM
Description of the local Environment in Arabidopsis
Language:HTML0 0
Jun-Lizst/BoneFight
Language:Python0 0
Jun-Lizst/Cardinal
Mass spectrometry imaging tools
Language:C0 0
Jun-Lizst/FISHscale
Spatial analysis of FISH data
Language:Jupyter Notebook0 0
Jun-Lizst/MetaboAnnotationTutorials
Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages
0 0
Jun-Lizst/nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Language:R0 0
Jun-Lizst/neuron_morphology
Tools for working with single-neuron morphological reconstructions
Language:Python0 0
Jun-Lizst/r3dmol
🧬 An R package for visualizing molecular data in 3D
Language:JavaScript0 0
Jun-Lizst/reactable
shiny 使用 reactable 实现信息的增删改查
Language:R0 0
Jun-Lizst/SCAFE
Single Cell Analysis of Five'Ends
Jun-Lizst/SingleCell-Multiomics
Language:HTML0 0
Jun-Lizst/TeraStitcher
A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
Language:C++0 0
Jun-Lizst/Tidy-Tuesday
Tidy Tuesday Projects
Jun-Lizst/UniprotR
Retrieving Information of Proteins from Uniprot
Language:R0 0
Jun-Lizst/VS-Analysis
VS-Analysis: A Python Script to Analyze Virtual Screening Results of Autodock Vina
Language:Python0 0
Jun-Lizst/vueR
vue.js for R
Language:R0 0
Jun-Lizst/wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
Language:C++0 0