Jun-Lizst
Molecular engineer interested in cell biology and neurobiology questions;
Institute of Organic Chemistry and Biochemistry (IOCB)Prague, Czech republic
Pinned Repositories
3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
3Dscript
BMAv1-Brain-Metabolome-Atlas
HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
leo1234j_website
personal blog of Junliszt
leo1234jv4
MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
sleepr
Sleep analysis with R.
TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
Jun-Lizst's Repositories
Jun-Lizst/ccfviewer
Simple application for viewing and slicing AI common coordinate framework atlas data
Jun-Lizst/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
Jun-Lizst/DeepRTplus
Deep Learning for Peptide Retention Time Prediction
Jun-Lizst/divingArterioleTracking
scripts for tracking diving arteriole diameters
Jun-Lizst/ElMaven
LC-MS data processing engine for large-scale metabolomic experiments.
Jun-Lizst/FastQC-1
A quality control analysis tool for high throughput sequencing data
Jun-Lizst/fgsea
Fast Gene Set Enrichment Analysis
Jun-Lizst/peakonly
Jun-Lizst/seurat-data
Dataset distribution for Seurat
Jun-Lizst/simba
SimBA (Simple Behavioral Analysis), a plug-and-play pipeline and GUI for developing supervised behavioral classifiers
Jun-Lizst/STARTapp
The START App: R Shiny Transcriptome Analysis Resource Tool
Jun-Lizst/SWC_BATCH_CHECK
Provides methods for batch validating data in SWC neuron morphology files
Jun-Lizst/SynthesiaKontrol
:musical_keyboard: Use Native Instruments Komplete Kontrol mk2 light guide in Synthesia
Jun-Lizst/vessap
Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
Jun-Lizst/AAV_fitness_landscape
Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"
Jun-Lizst/Arduino
open-source electronics prototyping platform
Jun-Lizst/CardinalWorkshop-OurConVII
Materials for the Cardinal workshop at OurCon VII, Saint-Malo, France, 2019
Jun-Lizst/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Jun-Lizst/genomepy
Download genomes the easy way.
Jun-Lizst/HappyTools
A tool for the (high-throughput) processing of HPLC data.
Jun-Lizst/hugo-future-imperfect-slim
Multilingual Blogging Theme for Hugo
Jun-Lizst/maven
Maven GUI: Metabolomics Analysis and Visualization Engine
Jun-Lizst/methods_class
"Approaches to Study Neural Circuits" course
Jun-Lizst/MusicGenreClassification
Classify music genre from a 10 second sound stream using a Neural Network.
Jun-Lizst/paintera
Jun-Lizst/Pial-Vasodilation-Analysis
matlab script for pia vessel dilation analysis
Jun-Lizst/ProbeDesign
Jun-Lizst/S2S_for_spike_inference
This repository contains the signal to signal network for spike estimation from calcium fluorescence signals
Jun-Lizst/tabula-muris-senis
Tabula Muris Senis
Jun-Lizst/Test-Code-not-final-
Laser profile measurement software