LRFreeborn

LRFreeborn's Stars

• voila-dashboards/voila

  Voilà turns Jupyter notebooks into standalone web applications

  Language:Python5.4k74739505

• rstudio/shiny

  Easy interactive web applications with R

  Language:R5.4k3342.7k1.9k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k50521333

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k521.8k599

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k15510521

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.4k174475

• ncbi/sra-tools

  SRA Tools

  Language:C1.1k56855246

• BioContainers/containers

  Bioinformatics containers

  Language:Dockerfile68232288248

• agshumate/Liftoff

  An accurate GFF3/GTF lift over pipeline

  Language:Python433715553

• brentp/cyvcf2

  cython + htslib == fast VCF and BCF processing

  Language:Cython378721572

• nextgenusfs/funannotate

  Eukaryotic Genome Annotation Pipeline

  Language:Python322161k85

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++287143828

• MrOlm/drep

  Rapid comparison and dereplication of genomes

  Language:Python258822437

• gosling-lang/gosling.js

  Grammar of Scalable Linked Interactive Nucleotide Graphics

  Language:TypeScript165752227

• stemangiola/tidybulk

  Brings bulk and pseudobulk transcriptomics to the tidyverse

  Language:R16568325

• hahnlab/CAFE

  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

  Language:C++112810136

• parklab/bamsnap

  Language:HTML11192925

• PedroMTQ/mantis

  A package to annotate protein sequences

  Language:Python533516

• ResearchComputing/Documentation

  Repository holding a wiki for Research Computing tutorials

  Language:Shell491311853

• MRCIEU/gwas-vcf-specification

  Specification for the GWAS-VCF format (manuscript in preparation)

  238143

• NCGAS/de-novo-transcriptome-assembly-pipeline

  Combined de novo transcriptome assembly - multiple assemblers - multiple parameters

  Language:Shell18669

• mikecroucher/HPC_schedulers

  Which schedulers are the most popular on current HPC systems?

  14649

• ngs-docs/2021-GGG298

  Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis

  Language:Python12336

• cran/chromoMap

  :exclamation: This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data

  Language:JavaScript9344

• NCBI-Codeathons/NCGAS-cloud-workshop

  NCGAS Cloud Workshop

  5803

• Amine-Namouchi/snpToolkit

  Language:Python4

• ResearchComputing/CUmulus_tutorials

  Tutorials and example workflows for CURC's on-prem cloud

  Language:Python30

• ResearchComputing/Supercomputing_Spinup_Spring_2022

  Language:Shell160