LangilleLab/microbiome_helper

Issues

• Deblur run error

  #63 opened 9 months ago by crisper78
  1

• How to determine Function with MMseqs2 or humann2 for now?

  #60 opened 2 years ago by wanglu2014
  3

• Microbiome Helper VM on Mac M2

  #64 opened 7 months ago by fconstancias
  0

• a issue about the concat_paired_end.pl

  #62 opened 10 months ago by zhangyongyongsyau
  1

• Citation

  #61 opened 2 years ago by Drob84761
  1

• mSystem paper datasets are unaccessible

  #57 opened 2 years ago by Zuopeng94
  1

• Why "Use of uninitialized value in join or string" error?

  #59 opened 2 years ago by wanglu2014
  1

• which tutorial have example data to download?

  #58 opened 2 years ago by wanglu2014
  1

• Scripts for Metagenome SOP v3

  #56 opened 2 years ago by rachelmugge
  6

• ModuleNotFoundError: No module named 'biom'?

  #51 opened 4 years ago by arsilan324
  1

• parallel Unknown option: link

  #55 opened 4 years ago by soilmicrobiome
  1

• reformat_fasta_edit.py

  #53 opened 4 years ago by DavidFY-Hub
  1

• reformat_fasta_edit.py

  #52 opened 4 years ago by DavidFY-Hub
  0

• microbiomehelper and qiime 2020

  #48 opened 4 years ago by turbo4xl
  1

• ARGs annotation

  #49 opened 4 years ago by mhmism
  1

• Improving Faprotax returns

  #50 opened 4 years ago by GarthWatson
  2

• --omit_columns option in collapse_table.py

  #46 opened 5 years ago by danielm710
  1

• Unstable taxonomic classification

  #43 opened 5 years ago by gavinmdouglas
  2

• Normalizing data obtained from other software?

  #44 opened 5 years ago by Jigyasa3
  2

• scons: building terminated because of errors.

  #39 opened 5 years ago by yjiakang
  7

• humann2_barplot

  #37 opened 6 years ago by lmanchon
  1

• GRCh38_PhiX database

  #36 opened 6 years ago by lmanchon
  2

• PICRUSt with de novo variants related databases

  #34 opened 6 years ago by AbhishakeL
  3

• mammlian blocking primers

  #32 opened 6 years ago by krmaas
  2

• Error with the VM

  #33 opened 6 years ago by cristianrohr
  8

• Biom error for convert_dada2_out.R

  #30 opened 6 years ago by jvhagey
  3

• Problems running metaphlan_to_stamp.pl

  #29 opened 6 years ago by little-hunter
  2

• Confusing taxonomy assigenments from dada2_chimera_taxa.R output files

  #26 opened 7 years ago by caijian89
  0

• Error in dada2_filter.R

  #25 opened 7 years ago by caijian89
  8

• Problem running FAPROTAX collapse_table.py in Python 3.6

  #27 opened 7 years ago by brookeweigel
  3

• Problem running assign_taxonomy.py

  #24 opened 7 years ago by micro-mario
  3

• About paired-end fastq data

  #23 opened 7 years ago by cam315
  2

• Question about Random Forest

  #21 opened 7 years ago by TarsLi
  1

• plot_metagenome_contributions.R

  #12 opened 7 years ago by rajansuja
  1

• PEAR no longer available

  #11 opened 7 years ago by TonyaWard
  2

• Assign Taxonomy with RDP classifer

  #9 opened 7 years ago by caijian89
  2

• Can I do denovo chimeric detection with MBH

  #8 opened 7 years ago by caijian89
  2

• not a real issue but a help request

  #4 opened 8 years ago by josemseoane
  3

• No pre-computed_results in Metagenomic Tutorial Data

  #3 opened 8 years ago by blue-moon22
  2

• Add in testing for scripts

  #1 opened 8 years ago by mlangill
  1

• missing double dash in command line vsearch

  #2 opened 8 years ago by dridk
  4