LiuJeremy

LiuJeremy's Stars

• moshi4/pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  Language:Python73443

• joan-smith/comprehensive-tcga-survival

  Comprehensive survival analyses on the TCGA data.

  Language:Python125

• bioforensics/pytaxonkit

  Python bindings for the TaxonKit library

  Language:Python312

• shenwei356/taxonkit

  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

  Language:Go36929

• deepomicslab/GCNFrame

  This is a python package for genomics study with a GCN framework.

  Language:Python387

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook934113

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python64.5k8k

• datawhalechina/leedl-tutorial

  《李宏毅深度学习教程》（李宏毅老师推荐👍，苹果书🍎），PDF下载地址：https://github.com/datawhalechina/leedl-tutorial/releases

  Language:Jupyter Notebook13.3k2.9k

• heshenghuan/CART

  classification and regression tree (CART) C++ implementation

  Language:C++61

• Edinburgh-Genome-Foundry/Geneblocks

  :diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences

  Language:Python383

• kipoi/kipoi

  Kipoi's model zoo API

  Language:Jupyter Notebook23341

• kundajelab/interpret-benchmark

  Benchmarking interpretation methods

  Language:Jupyter Notebook1

• 1202kbs/Understanding-NN

  Tensorflow tutorial for various Deep Neural Network visualization techniques

  Language:Jupyter Notebook34589

• pytorch/captum

  Model interpretability and understanding for PyTorch

  Language:Python4.8k489

• PUGEA/bit-mapping

  Language:C++21

• XWangLabTHU/NeuronMotif

  NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks

  Language:Python151

• kipoi/kipoiseq

  Standard set of data-loaders for training and making predictions for DNA sequence-based models.

  Language:Python7713

• jaswindersingh2/SPOT-RNA

  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

  Language:Perl9433

• YeoLab/makebigwigfiles

  Converts a BAM file into strand-specific bigwig files.

  Language:Python2

• shadowsocks/shadowsocks

  Language:Python33.6k18.6k

• xypan1232/iDeepS2

  Language:Python4

• mhorlacher/Benchmark-RBP

  Language:Python6

• mana438/RNABERT

  Language:Python4313

• neufeld/pandaseq

  PAired-eND Assembler for DNA sequences

  Language:C12924

• mmtechslv/nwunch

  Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.

  Language:Python135

• jtloong/needleman-wunsch-py

  Python command line utility for nucleotide sequence alignment.

  Language:Python4

• seqan/needle

  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

  Language:C++146

• odb9402/CNNPeaks

  The ChIP-Seq peak calling algorithm using convolution neural networks

  Language:Python133

• tanjimin/C.Origami

  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

  Language:Python609

• ltschmitt/RecGen

  Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site

  Language:Python113