Luoyunfan-Jason

Luoyunfan-Jason's Stars

• practical-tutorials/project-based-learning

  Curated list of project-based tutorials

  209k3.1k18627.3k

• WZMIAOMIAO/deep-learning-for-image-processing

  deep learning for image processing including classification and object-detection etc.

  Language:Python23.6k1614248.1k

• pyg-team/pytorch_geometric

  Graph Neural Network Library for PyTorch

  Language:Python21.7k2543.6k3.7k

• microsoft/nni

  An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.

  Language:Python14.1k2842.1k1.8k

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python13.6k995781.2k

• hustvl/Vim

  [ICML 2024] Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Model

  Language:Python3.1k32119208

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.5k31851202

• google/vizier

  Python-based research interface for blackbox and hyperparameter optimization, based on the internal Google Vizier Service.

  Language:Python1.5k243997

• optuna/optuna-examples

  Examples for https://github.com/optuna/optuna

  Language:Python702875177

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C687482k240

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++560311.2k68

• THUDM/GraphMAE

  GraphMAE: Self-Supervised Masked Graph Autoencoders in KDD'22

  Language:Python484156576

• zfjsail/gae-pytorch

  Graph Auto-Encoder in PyTorch

  Language:Python4185979

• LinearFold/LinearFold

  The new source code of the LinearFold, linear-time prediction for RNA secondary structures

  Language:C++15891049

• nanoporetech/modkit

  A bioinformatics tool for working with modified bases

  Language:Rust158133158

• ablab/IsoQuant

  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

  Language:Python1541320714

• AlwaysFHao/Mamba-Install

  本仓库旨在介绍如何通过源码编译的方法成功安装mamba，可解决selective_scan_cuda和本地cuda环境冲突的问题

  4710

• bowang-lab/Orthrus

  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.

  Language:Python46476

• lingxusb/megaDNA

  Language:Jupyter Notebook41116

• TencentAILabHealthcare/MLA-GNN

  Language:Python412211

• Genentech/Isosceles

  The Isoforms from Single-Cell; Long-read Expression Suite

  Language:R22391

• satijalab/PASTA

  Language:R16676

• comprna/R2Dtool

  Analyse RNA feature distributions.

  Language:Jupyter Notebook15544

• MonashBioinformaticsPlatform/polyApipe

  polyApipe

  Language:R135106

• xiongxslab/Translatomer

  Language:Jupyter Notebook132

• JieZheng-ShanghaiTech/HiCoEx

  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts

  Language:Jupyter Notebook11214

• LuChenLab/SCAPE

  Single Cell Alternative Polyadenylation using Expectation-maximization

  Language:Python72192

• eddieimada/REPAC

  Language:R6123

• chengl7-lab/scape

  A package for estimating alternative polyadenylation events from scRNA-seq data.

  Language:Python5151

• lifuyi774/Allocator

  Language:Python2101