Mcouedel

Mcouedel's Stars

• easystats/easystats

  :milky_way: The R easystats-project

  Language:R1.1k2832581

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++69242555126

• drewtempelmeyer/palenight.vim

  Soothing color scheme for your favorite [best] text editor

  Language:Vim Script65862684

• benjjneb/decontam

  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

  Language:R1531115427

• linzhi2013/MitoZ

  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

  Language:Shell1211122339

• rfortherestofus/pagedreport

  Templates for {pagedown}

  Language:CSS11974719

• fhcrc/seqmagick

  An imagemagick-like frontend to Biopython SeqIO

  Language:Python116127622

• roblanf/sangeranalyseR

  functions to analyse sanger sequencing reads in R

  Language:R10069124

• leepenney/markdown-gallery

  Converts a list of images into gallery mark-up

  Language:JavaScript423110

• timkahlke/BASTA

  Basic Sequence Taxonomy Annotator

  Language:Python4044113

• mahendra-mariadassou/phyloseq-extended

  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul

  Language:R3371119

• frederic-mahe/swarm

  A robust and fast clustering method for amplicon-based studies

  Language:Python31725

• DominikBuchner/BOLDigger

  A python package to query different databases of boldsystems.org

  Language:Python302384

• Pas-Kapli/mptp

  mPTP - a tool for single-locus species delimitation

  Language:C2611876

• gauravsk/ranacapa

  R package for downstream analysis for anacapa eDNA pipeline

  Language:R2363311

• beast-dev/RBeast

  R tools for posterior analyses using BEAST

  Language:R2028189

• donaldtmcknight/microDecon

  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing

  Language:R15064

• meglecz/mkCOInr

  Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options

  Language:Perl13454

• ifremer-bioinformatics/samba

  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

  Language:Nextflow12255

• DominikBuchner/BOLDigger-commandline

  BOLDigger as a commandline tool

  Language:Python90150

• jun-inoue/phyloBARCODER

  A web tool for species identification of metabarcoding DNA sequences by estimating phylogenetic trees.

  Language:HTML7100

• aitgon/vtam

  Language:Python51313

• chrishah/MitoFish2tbl

  Convert MitoAnnotator (MitoFish) annotation file to NCBI feature table format (*.tbl)

  Language:Python5110

• khellton/zibppca

  Prinicipal Component Analysis for Zero-Inflated Bivariate Poisson distributed variables

  Language:R5200

• cduvallet/q2-dbotu

  QIIME 2 plugin for distribution-based clustering

  Language:Python4210

• jshleap/TA_pipes

  Scripts and pipelines for the manuscript "Assessment of current taxonomic assignment strategies for metabarcoding eukaryotes: Insights from mock communities"

  Language:Python2200

• zjgold/Indonesia_eDNA

  Environmental DNA in a Global Biodiversity Hotspot: Lessons from Coral Reef Fish Diversity Across the Indonesian Archipelago

  Language:R2101

• cpavloud/ARMS

  This project is setting up a network of Autonomous Reef Monitoring Structures in European coastal seas.

  1000

• jflot/ABGDconsensus

  a script to generate a single consensual species delimitation using ABGD

  Language:Shell1200

• yacinebenchehida/SAMPLE

  Language:R1100