Pinned Repositories
ArabidopsisRNAseqExample
Chinese_indicine_pan-genome_project_scripts_and_piplines
Chinese indicine cattle pan-genome project scripts and piplines
ggPetalPlot
GOplot_example
GSAT
Graph-based Sequence Assembly Toolkit
mapchina
R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.
NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
PlantGenomeAnnotation
ScriptCollections
WGCNA_example
NotebookOFXiaoMing's Repositories
NotebookOFXiaoMing/ArabidopsisRNAseqExample
NotebookOFXiaoMing/PlantGenomeAnnotation
NotebookOFXiaoMing/ScriptCollections
NotebookOFXiaoMing/WGCNA_example
NotebookOFXiaoMing/Chinese_indicine_pan-genome_project_scripts_and_piplines
Chinese indicine cattle pan-genome project scripts and piplines
NotebookOFXiaoMing/GSAT
Graph-based Sequence Assembly Toolkit
NotebookOFXiaoMing/NoteBook
NotebookOFXiaoMing/pomeChloroplast
NotebookOFXiaoMing/ScientificDataVis
NotebookOFXiaoMing/SuperPangenomeofGrapevines
NotebookOFXiaoMing/TomatoSuperPanGenome
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
NotebookOFXiaoMing/AMPRIL-genomes
scripts for the project of seven thaliana genomes assembly
NotebookOFXiaoMing/awesome-pangenomes
A list of software for pangenomics
NotebookOFXiaoMing/carrot
这儿收集了一些免费好用的ChatGPT镜像站 当前：60个站点
NotebookOFXiaoMing/digital-resume-template-streamlit
NotebookOFXiaoMing/DockerTarBuilder
它是一个工作流。可快速构建指定架构/平台的docker镜像
NotebookOFXiaoMing/ggdc
Datacamp Themes for ggplot2.
NotebookOFXiaoMing/LTRpred
De novo annotation of young retrotransposons
NotebookOFXiaoMing/minigraph-barley
Repository for scripts used in barley pan-genome graph construction with Minigraph
NotebookOFXiaoMing/pancentromere
The Arabidopsis pancentromere evolves through rapid cycles of satellite homogenization and centrophilic ATHILA retrotransposon invasion
NotebookOFXiaoMing/pomeRTD
NotebookOFXiaoMing/snakemake-with-R
Simple template for running snakemake with R
NotebookOFXiaoMing/SnakemakeIntroduction
NotebookOFXiaoMing/SNP_notes
Notes on SNP-related tools and genome variation analysis
NotebookOFXiaoMing/SolEvo_PotatoDele
Use hifi to assembly the Sol genome, and dissecting Sol evo
NotebookOFXiaoMing/sourpomegenome
NotebookOFXiaoMing/soybean_sv_paper
Structural variation analysis in soybean using Oxford Nanopore and Illumina sequencing data
NotebookOFXiaoMing/superpangenome_construction
NotebookOFXiaoMing/thompson-et-al-2020-chinook-salmon-migration-timing
NotebookOFXiaoMing/TWAStutorial
This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression can repeatedly link genes to functions in maize." The Plant Journal (2024).