NotebookOFXiaoMing

NotebookOFXiaoMing's Stars

• CJ-Chen/TBtools-II

  GUI/CommandLine Tool Box for biologistists to utilize NGS data.

  Language:Shell9193466188

• ablab/spades

  SPAdes Genome Assembler

  Language:C++765321.2k139

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python76136492186

• cxli233/Online_R_learning

  Online R learning for applied statistics

  499183101

• Kinggerm/GetOrganelle

  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

  Language:Python2821125354

• gosling-lang/gos

  A declarative interactive genomics visualization library for Python.

  Language:Python21834814

• TongZhou2017/itol.toolkit

  Helper Functions for Interactive Tree Of Life (iTOL)

  Language:R15751717

• colindaven/awesome-pangenomes

  A list of software for pangenomics

  905317

• phasegenomics/juicebox_scripts

  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

  Language:Python6481510

• wyguo/ThreeDRNAseq

  A pipeline for differential expression and differential alternative splicing analysis

  6144626

• wjian8/psvcp_v1.01

  Pan-genome Construction and Population Structure Variation Calling pipeline

  Language:Python343166

• lauguma/GWideCodeML

  A Python package for testing evolutionary hypotheses in genome-wide approaches.

  Language:Python3111110

• bichangwei/PMAT

  An efficient assembly tool for plant mitochondrial genome

  Language:Python282247

• mdozmorov/SNP_notes

  Notes on SNP-related tools and genome variation analysis

  275010

• hwc2021/GSAT

  Graph-based Sequence Assembly Toolkit

  Language:Perl202136

• yywyaoyaowu/SolEvo_PotatoDele

  Use hifi to assembly the Sol genome, and dissecting Sol evo

  Language:Python15114

• xuebozhao16/VMap1.1-Population_history_of_wheats

  Some codes about evolutionary history of wheats

  Language:R8102

• Shengyu-Liu558/CPGView

  Language:Perl6310

• Xuelei-Dai/Chinese_indicine_pan-genome_project_scripts_and_piplines

  Chinese indicine cattle pan-genome project scripts and piplines

  Language:Python6102

• AnnaSyme/organelle-assembly

  Language:Shell5301

• frankandreace/CRHPG

  Construction and representation of human pangenome graphs

  Language:Shell5200

• NotebookOFXiaoMing/ArabidopsisRNAseqExample

  Language:Python3100

• tangerzhang/GenomicsPracticeData

  3200

• eriqande/thompson-et-al-2020-chinook-salmon-migration-timing

  Language:Shell2301

• NotebookOFXiaoMing/PlantGenomeAnnotation

  Language:Python2101

• NotebookOFXiaoMing/ScriptCollections

  Language:Python2100

• NotebookOFXiaoMing/mapchina

  R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.

  Language:R1000

• NotebookOFXiaoMing/NoteBook

  Language:HTML1100

• NotebookOFXiaoMing/tutorials

  Tutorials on phylogenetic and phylogenomic inference

  Language:HTML1000

• zhixue/EUPAN3

  EUkaryote Pan-genome ANalysis toolkit for 3rd generation sequencing

  Language:Python1100