Open-Science-Tools/nd2reader

Issues

• Apple Silicon Error (pims_nd2)

  #71 opened 2 months ago by henriquenunez
  0

• Error: 'numpy' Module Has No Attribute 'float' in nd2reader

  #69 opened 6 months ago by mansouralawi
  1

• in numpy ver1.24+, the numpy.float is deprecated, please fix it...

  #67 opened a year ago by zhouchunyuan
  0

• Plotting ROI's from nd2 files

  #47 opened 3 years ago by ninning
  4

• Wrong z parameter in Focused EDF files

  #66 opened 2 years ago by BennyGinger
  0

• pull out the label dXPos/dYPos and dPosX/dPosY

  #65 opened 2 years ago by TanviDeora
  0

• float64 .nd2 files don't recognize intensities above 2**16-1

  #64 opened 2 years ago by joaomamede
  0

• documentation link is broken

  #61 opened 2 years ago by loganfred
  1

• parser.calculate_image_properties breaks if "z_levels" are empty

  #63 opened 2 years ago by alonyan
  0

• Cannot open nd2 files obtained with version 5.21.03 of the acquisition software

  #62 opened 2 years ago by GiorgiaTortora
  0

• nd2reader outputs empty arrays for certain ND2 files.

  #56 opened 2 years ago by zjniu
  2

• Parsing point name in nd2

  #26 opened 5 years ago by hftsai
  5

• DTYPE not properly parsed [NotImplemented]

  #44 opened 4 years ago by ggirelli
  2

• Build error on Travis due to SSH git url for docs

  #51 opened 3 years ago by rbnvrw
  1

• Missing metadata

  #10 opened 5 years ago by zorba-the-geek
  3

• Improving metadata: Add X and Y stage coordinates in Metadata.

  #57 opened 3 years ago by joaomamede
  3

• Loaded images are gray scale

  #49 opened 3 years ago by aknckaan
  2

• Single time point exported from time series appears to have as many frames as original

  #53 opened 3 years ago by jni
  1

• git-lfs in the repo pointing to missing objects

  #55 opened 3 years ago by zolfariot
  1

• Cannot open certain stitched .nd2 files from Elements

  #31 opened 5 years ago by ColinDTaylor
  15

• reading from files being written

  #54 opened 3 years ago by joaomamede
  4

• Error while parsing partially saved nd2 files

  #23 opened 5 years ago by bellonet
  3

• Colors wrong when saving ND2 to png

  #52 opened 3 years ago by LordKnish
  9

• VERSION handling in setup.py breaks some automatic tools

  #42 opened 3 years ago by ggirelli
  3

• Bad reader sizes are parsed.

  #38 opened 4 years ago by joaomamede
  1

• Bug in attempt to remove unwanted bytes

  #50 opened 3 years ago by guiwitz
  1

• More metadata?

  #36 opened 4 years ago by joaomamede
  7

• wrong number of z plane / time points

  #46 opened 3 years ago by jboulanger
  2

• KeyError when opening nd2 file

  #48 opened 3 years ago by dkeekstra
  1

• Issues loading large size images

  #9 opened 5 years ago by baatax
  6

• Issue to open stitched RGB nd2 files (related to issue #17)

  #45 opened 3 years ago by bioimage-analysis
  1

• [ERROR] Library not working in Windows

  #41 opened 4 years ago by WaterKnight1998
  2

• default_coords fails for t (always stuck at time 0)

  #37 opened 4 years ago by joaomamede
  1

• Is it possible to read from a io.BytesIO or io.StringIO or just accepts filename?

  #35 opened 4 years ago by WaterKnight1998
  2

• ND2Reader gets incorrect video length for cut movies with NISElements

  #29 opened 5 years ago by TeaWolf
  2

• File with large number of ROIs is not parsed correctly

  #13 opened 5 years ago by leeleavitt
  5

• Z coord of Timepoint seen as Z steps

  #34 opened 4 years ago by bioimage-analysis
  9

• In 3.2.0, get_frame_vczyx() implementation breaks functionality

  #24 opened 5 years ago by WMAPernice
  7

• Z-axis of large ND2 image not properly parsed.

  #27 opened 5 years ago by ggirelli
  4

• in 3.2.0, get_frame_2D fails

  #25 opened 5 years ago by tsvikas
  3

• Access z-stack metadata

  #11 opened 5 years ago by rbnvrw
  2

• Issues to Open stiched ND2 files

  #17 opened 5 years ago by trasse
  4

• Add sample ND2 images from openmicroscopy to the unit tests

  #18 opened 5 years ago by rbnvrw
  2

• Long sequence of frames in metadata

  #16 opened 5 years ago by rbnvrw
  0

• Timesteps in ms unable to be located

  #19 opened 5 years ago by leeleavitt
  1

• Channel handling?

  #12 opened 5 years ago by jbf81tb
  3

• Unable to: from nd2reader import ND2Reader

  #14 opened 5 years ago by HarmlessHarm
  4

• Reading 'date' in metadata fails within PyQt5.QWidgets.QApplication

  #7 opened 5 years ago by LeBarbouze
  1

• Z resolution (sampling over Z)

  #8 opened 6 years ago by ggirelli
  2

• Array shape

  #6 opened 6 years ago by fjorka
  5