Pinned Repositories
phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
AnExLearningSummit2023
Materials for AnExLearningSummit2023
assnake
Snakemake pipeline for metagenomics data. Part of Boimedical Research Platform.
assnake-core-preprocessing
assnake-dada2
ATACseqQC
ATAC-seq Quality Control
ImGQfinder
The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.
ImGQFinder
PollyTikhonova's Repositories
PollyTikhonova/ImGQfinder
The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.
PollyTikhonova/AnExLearningSummit2023
Materials for AnExLearningSummit2023
PollyTikhonova/assnake
Snakemake pipeline for metagenomics data. Part of Boimedical Research Platform.
PollyTikhonova/assnake-core-preprocessing
PollyTikhonova/assnake-dada2
PollyTikhonova/ATACseqQC
ATAC-seq Quality Control
PollyTikhonova/bioconda-recipes
Conda recipes for the bioconda channel.
PollyTikhonova/bioinformatics_homeworks
https://PollyTikhonova.github.io/bioinformatics_homeworks/
PollyTikhonova/Chronos_for_Galton
QGIS Python, which uses API Galton (galton.urbica.co) to build isochrones
PollyTikhonova/coursework
https://PollyTikhonova.github.io/coursework/
PollyTikhonova/GloAcademy_homeworks
https://pollytikhonova.github.io/GloAcademy_homeworks/
PollyTikhonova/hythere
PollyTikhonova/idr
IDR
PollyTikhonova/iTOL
A Python API and a command-line tool for the Tree of Life
PollyTikhonova/iTOL-client
A client that allows managing the iTOL data
PollyTikhonova/JessEV
Joint epitope selection and spacer design for string-of-beads vaccines
PollyTikhonova/markerfinder
scripts for predicting phylogenetic marker genes
PollyTikhonova/neater-bookmarks
A neater bookmarks tree popup extension for Chrome
PollyTikhonova/phigaro
Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.
PollyTikhonova/phigaro_git_action
PollyTikhonova/PollyTikhonova.github.io
PollyTikhonova/PyMdown
CLI batch markdown converter/previewer. Wrapped around Python's Markdown Package and Pygments.
PollyTikhonova/Python_in_MIIGAiK
https://pollytikhonova.github.io/Python_in_MIIGAiK/
PollyTikhonova/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
PollyTikhonova/Resume
https://pollytikhonova.github.io/Resume/
PollyTikhonova/temporary_works
I will upload here all working & unsorted stuff
PollyTikhonova/Variable-Selection-CoDA
PollyTikhonova/What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
PollyTikhonova/workshops
PollyTikhonova/xgboost
Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow