Pinned Repositories
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
DECIPHER-seq
Data and code to reproduce results from DECIPHER-seq paper
scuttle
Clone of the Bioconductor repository for the scuttle package.
miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
Breast-Cancer
hypoxia
anndata2ri
Convert between AnnData and SingleCellExperiment
scCODA
A Bayesian model for compositional single-cell data analysis
CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.