Issues
- 1
Convert anndata to sce without using jupyter
#175 opened by RunyuXia - 2
- 0
Issue with ExperimentHub when trying to run test cases
#160 opened by stkgo - 1
Can't find SCE
#150 opened by eblchen - 3
Issue on %load_ext rpy2.ipython
#145 opened by ScienceComputing - 4
anndata2ri activation error
#129 opened by SaiH99 - 2
- 1
Missing layers after conversion from SCE
#136 opened by shaln - 3
- 0
enable pytest -Werror
#125 opened by flying-sheep - 0
Get rid of activate()
#109 opened by flying-sheep - 0
Support DelayedMatrix assays
#96 opened by multimeric - 25
Conversion 'py2rpy' not defined for objects of type '<class 'numpy.ndarray'>'
#50 opened by satellite119 - 0
Fully support and test bool matrices
#113 opened by flying-sheep - 0
Switch to Ruff
#108 opened by flying-sheep - 0
Test remaining R matrix types
#110 opened by flying-sheep - 0
Figure out stacklevel for errors and warnings
#111 opened by flying-sheep - 24
Conversion broken with rpy2 3.4.3
#63 opened by dburkhardt - 2
ValueError: Not an rpy2 R object and unable to map it to one: AnnData object with
#104 opened by nroak - 2
- 4
TypeError when following sc-tutorial
#58 opened by mshirazi - 1
- 1
scvelo cannot read the loom files
#93 opened by mayurdoke6 - 2
Exactly how to use LocalConverter to convert from AnnData to SCE within a normal Python script
#90 opened by EdwardAgboraw - 0
- 1
Getting segmentation fault(core dumped) error while converting anndata to SCE object across multiple function calls
#85 opened by ankur26197-acog - 1
cannot install anndata2ri
#87 opened by houlinyu - 4
bioconda version out of date
#86 opened by scottgigante-immunai - 1
R_HOME is None (MacOS Monterey 12.4)
#84 opened by michallipinski - 1
__call__() keywords must be strings
#62 opened by danli349 - 2
- 5
RStudio crash when importing anndata2ri
#45 opened by JLiLab - 0
Fix publishing
#74 opened by flying-sheep - 2
- 2
- 1
- 1
- 5
Conversion 'py2rpy' not defined for objects of type '<class 'anndata.compat._overloaded_dict.OverloadedDict'>'
#46 opened by gokceneraslan - 1
- 0
- 1
localconverter error
#61 opened by le-ander - 4
- 0
Conversion from SingleCellExperiment to AnnData fails to convert `.uns` back to python objects
#57 opened by scottgigante - 3
fail conversion with anndata 0.7.1
#43 opened by giovp - 3
unintuitive mapping for `adata.var`
#55 opened by scottgigante - 3
Conversion to AnnData fails - R object with classes: ('SingleCellExperiment',) mapped to:
#54 opened by MoritzTh - 4
invalid class “dgRMatrix” object: slot j is not increasing inside a column
#51 opened by scottgigante - 3
importr("Matrix") in anndata2ri.scipy2ri triggers rmat_to_spmat(rmat) and leads to TypeError
#47 opened by gokceneraslan - 7
import error
#44 opened by iosonofabio - 2