Issues
- 0
- 0
- 0
MSMS installation on MacOS
#55 opened by gcroci2 - 0
- 2
- 0
tmhmm installtion and running
#53 opened by kishor2019 - 0
mapping pdb resnum to uniprot resnum
#51 opened by JoshuaMeyers - 0
Use of .ix indexing is deprecated in pandas & no pandas version specified in requirements.
#49 opened by a-r-j - 0
characterize_residue_mutation will only return properties defined in EXTENDED_AA_PROPERTY_DICT_ONE
#48 opened by pvphaneuf - 0
Fail to read P00533
#47 opened by bkellman - 1
Issues running the tutorial
#45 opened by bkellman - 1
tmscore issue
#46 opened by bkellman - 0
Comprehensive calculation of amino acid composition
#44 opened by nmih - 0
Add runtime estimates for third party programs
#43 opened by nmih - 3
- 1
cachetools does not work in Python 2?
#2 opened by nmih - 1
Virtual Jupyter notebooks (Everware, Binder) to have external software preinstalled for workflows would be much better for sustainability
#23 opened by nmih - 3
- 1
Architectural change todo -- PDBProp objects with the same ID for a GEM-PRO should point to the same object rather than being created under different proteins
#26 opened by nmih - 0
- 0
- 1
Importing ssbio on python2.7 cobra environment
#20 opened by nmih - 0
Revamp logging to disable at higher levels
#22 opened by nmih - 1
Option to run QC/QA for all structures
#10 opened by nmih - 0
- 1
Problematic PDB files: list of IDs
#17 opened by nmih - 2
- 0
- 0
Cleaning mmtf files and saving as pdbs
#15 opened by nmih - 1
Intuitive coloring of protein structures
#12 opened by nmih - 0
lxml etree doesn't work in Python 3.6?
#16 opened by nmih - 0
Issue saving PDB 5LZD
#14 opened by nmih - 0
pdb_file_type does not propagate when loading a GEM
#13 opened by nmih - 2
No module named json_r
#9 opened by erolkavvas - 3
- 0
Download structure - fixes for python 2
#7 opened by nmih - 1
Wanted: structure viewer in Jupyter notebook
#1 opened by nmih - 1
Problems when saving taxonomy ID and other potential non existing fields from a PDB
#4 opened by nmih - 1
Problematic PDB files
#5 opened by nmih - 0