Shamir-Lab/SCAPP
SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z
PythonMIT
Issues
- 4
SCAPP error on Flye assembly
#40 opened by brambloemen - 2
Questions about metaflye_gfa2fastg.py
#29 opened by yusuketsuda - 5
pipeline
#39 opened by cabraham03 - 3
- 1
the origin code
#37 opened by Wanli-HE - 26
is the program running normal?
#36 opened by Wanli-HE - 1
subprocess.CalledProcessError
#35 opened by Wanli-HE - 1
tools version
#34 opened by Wanli-HE - 7
Installation Failed using Conda
#33 opened by lhuang3s - 1
Which contigs compose the confident_cycs?
#30 opened by Paupiera - 1
SCAPP crashing
#32 opened by tpellegrinetti - 1
k-mer selection
#31 opened by yuqing-feng - 0
running time
#27 opened by Wanli-HE - 1
SCAPP exit gracefully
#26 opened by pbelmann - 1
- 7
- 3
recovery of circular viral genome
#23 opened by BH-Lab - 1
- 5
SCAPP and Plasclass
#20 opened by ilkaybuysal - 18
the error: "python: can't open file 'scapp': [Errno 2] No such file or directory"
#18 opened by ilkaybuysal - 1
Is metaFlye being for long-read metagenome assembly create an issue for short reads?
#21 opened by ilkaybuysal - 2
SCAPP running for a long time and then, segfault
#19 opened by eperezv - 6
SCAPP failing during classify stage
#17 opened by rhysnewell - 17
BWA/samtools error
#15 opened by dpellow - 4
Quick question
#16 opened by jpaganini - 41
- 7
tblastn error
#12 opened by jpaganini - 2
hi! do you know how to solve this problem, it seems like some data will have such problem
#13 opened by Wanli-HE - 1
Reporting an Error
#11 opened by vappiah - 2
- 4
Error filtering by plasmid genes.
#10 opened by Rachael-16 - 1
warning incompatible versions
#8 opened by SilasK - 4
SCAPP don't find plasmid in Cami1 dataset
#7 opened by SilasK - 7
SCPP fails with samtools 1.10
#6 opened by SilasK - 6
Conda installation?
#3 opened by Anto007 - 6
samtools error
#4 opened by Anto007 - 2
No module named 'recyclelib'
#2 opened by pianpianyouche - 2
Tagged release
#1 opened by druvus