Sohambiswas8
Data Analyst | Bioinformatics | Biomedical Genomics
Indian Institute of Technology (IIT), JodhpurKolkata, India
Sohambiswas8's Stars
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
mummer4/mummer
Mummer alignment tool
CompEpigen/figeno
Tool for plotting sequencing data along genomic coordinates.
Cloufield/gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
jtleek/genstats
Statistics course for JHU Genomic Data Science Sequence
wrpearson/fasta36
Git repository for FASTA36 sequence comparison software
AspirinCode/awesome-AI4MolConformation-MD
List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning
compbiocore/VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
anton-bushuiev/PPIRef
Dataset and package for working with protein-protein interactions in 3D
harvardinformatics/GenomeAnnotation
Best practices and workflow for genome annotation
igsr/1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
mklarqvist/tomahawk
Fast calculations of linkage-disequilibrium in large-scale human cohorts
jkimlab/PAPipe
JuliaEpi/MathEpiDeepLearning
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
benthecoder/JohnHopkinsDataScience
My Code Repository for Coursera Data Science Specialization by John Hopkins University
hbctraining/variant_analysis
stephenturner/mergelanes
Merge fastq files split over lanes
americocunhajr/EPIDEMIC
EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.
SFUStatgen/LDheatmap
BIMSBbioinfo/mergen
AI-Driven Code Generation, Explanation and Execution for Data Analysis
IBEXCluster/HPC-GVCW
Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.
vsbuffalo/recmap
A command line tool and Rust library for working with recombination maps.
evanpeikon/BLAST
A DIY Guide To BLAST Tools For Sequence Alignment
phil-grayson/SexFindR
segrelabgenomics/ECLIPSER
Enrichment of Causal Loci and Identification of Pathogenic cells in Single Cell Expression and Regulation data
nayoung9/BIOINFO_practical_scripts_in_use
scripts that I commonly used / filtering / formatting / what else
Song921012/MathEpiDeepLearningTutorial
Tutorials on math epidemiology and epidemiology informed deep learning methods
GenomicsAotearoa/VariomeGenomeAssembly
ZhaoBioinformaticsLab/PIP_SNP
PIP-SNP: A Pipeline for Processing SNP Data Featured as Linkage Disequilibrium Bin Mapping, Genotype Imputing and Marker Synthesizing.