Spatial-Systems-Biology-Freiburg/eDPM

Issues

• generate obs_fun, obs_dfdx, obs_dfdp autmatically if only choosing component of state variable

  #28 opened 2 years ago
  0

• CLEANUP PYDANTIC MODEL DEFINITION

  #27 opened 2 years ago
  0

• Documentation

  #26 opened 2 years ago
  0

• Develop more discretization methods

  #25 opened 2 years ago
  0

• Find a good name for the package

  #24 opened a year ago
  0

• specifying identical_times=true for FisherModelParametrized does not change shape of times

  #23 opened 2 years ago
  0

• use initial conditins of ODE as parameters

  #22 opened 2 years ago
  1

• add option to possibly use different discretization penalty function

  #21 opened 2 years ago
  2

• add variable in FisherResults to store discretization penalty results.

  #20 opened 2 years ago
  0

• print output when starting solving/optimization routine

  #19 opened 2 years ago
  1

• sample initial conditions of ODE

  #18 opened 2 years ago
  0

• Deserialize FisherResult and store to file/database

  #17 opened 2 years ago
  0

• check variable naming for consistency

  #16 opened 2 years ago
  1

• finish scipy global optimization

  #15 opened 2 years ago
  0

• implement covariance calculation

  #14 opened 2 years ago
  2

• use observable in fischer information matrix

  #13 opened 2 years ago
  0

• implement discretization penalty function

  #12 opened 2 years ago
  0

• Write Readme describing the project

  #11 opened 2 years ago
  0

• cleanup commit b2e914742abf26f5ea20e7437fbbe81a1df595b0

  #9 opened 2 years ago
  1

• Add uncertainty (variance) of the measurements in Fisher information matrix calulation

  #8 opened 2 years ago
  2

• model design: no lag-phase

  #7 opened 2 years ago
  0

• optimization structural: formalize starting and iteration procedure

  #6 opened 2 years ago
  1

• sampling: implement continuous sampling of time and temperature values

  #5 opened 2 years ago
  0

• plots: create experimental design plots

  #4 opened 2 years ago
  1

• model design: generate more results with other observables

  #3 opened 2 years ago
  0

• structural changes: uniy sorting_key and observable

  #2 opened 2 years ago
  3

• Rework database saving

  #1 opened 2 years ago
  0