Pinned Repositories
atacr
Analysing Capture Seq Count Data
blastjs
a BLAST+ wrapper for Node.js
blastjs-demo
documentation
List of repos that constitute team documentation
how_to_create_repo_names
Format for naming new repos
Merit
A web app for serving Mozilla Badges build on top of Play Framework 2
snpFC
Filter and compare SNPs from multiple VCF files
software_projects
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
stomatameasurer
Stomata detection from TIFF fluorescence images of leaves
sugarnet
Sugar Net
Team MacLean Bioinformatics's Repositories
TeamMacLean/stomatameasurer
Stomata detection from TIFF fluorescence images of leaves
TeamMacLean/dataHog
TSL read storage system
TeamMacLean/summerSchool
TeamMacLean/conda_on_ubuntu_wsl
Setting up bioconda and bioinformatics tool on ubuntu app on Windows with WSL2
TeamMacLean/pyani
Python module for average nucleotide identity analyses
TeamMacLean/how_to_create_repo_names
Format for naming new repos
TeamMacLean/daily-storage-vis
TeamMacLean/device
TeamMacLean/dna-usage
TeamMacLean/effector_class_ms
TeamMacLean/ena-js
TeamMacLean/fiat
assorted tools for image analysis used by TSL Talbot lab
TeamMacLean/fridge
TeamMacLean/glowseeds
counting glowing seeds from paired brightfield and fluorescence images
TeamMacLean/hsvfinder
A Python+OpenCV implementation that reports HSV value ranges in selected areas. Works similar to Adobe Photoshop's magic wand selection tool.
TeamMacLean/kraken_add_genome_and_classify
Adding genome library to kraken2 existing database and do taxonomic classification of raw reads
TeamMacLean/kraken_reads_classification
classify raw reads with kraken2
TeamMacLean/lichengo
R package for GO analysis for lichen-forming organisms
TeamMacLean/msc_laptop_image_installation
TeamMacLean/osgo
package for basic GO analysis of O.sativa
TeamMacLean/pandora-api
TeamMacLean/pandora-web
TeamMacLean/punchcard
TeamMacLean/redpatch
Finding Disease Lesions in Plant Leaves
TeamMacLean/redpatch-web
TeamMacLean/redpatchcam
redpatch instance on pi cam
TeamMacLean/replace_maker_ids
Replace maker ids in GFF files by the mapping names provided
TeamMacLean/snpEff_add_genome_to_database
Add a new genome/assembly to snpEff database with gff3 annotation file
TeamMacLean/split_and_count
snakemake pipeline for splitting Mo from Rice reads by Kraken and performing Kallisto counts on HPC
TeamMacLean/split_bam_by_chromosome
Split aligned reads in Bam file by chromosome/contig/scaffold ids