Pinned Repositories
atacr
Analysing Capture Seq Count Data
blastjs
a BLAST+ wrapper for Node.js
blastjs-demo
documentation
List of repos that constitute team documentation
how_to_create_repo_names
Format for naming new repos
Merit
A web app for serving Mozilla Badges build on top of Play Framework 2
snpFC
Filter and compare SNPs from multiple VCF files
software_projects
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
stomatameasurer
Stomata detection from TIFF fluorescence images of leaves
sugarnet
Sugar Net
Team MacLean Bioinformatics's Repositories
TeamMacLean/atacr
Analysing Capture Seq Count Data
TeamMacLean/sugarnet
Sugar Net
TeamMacLean/CellArchitect
Robatzek Group CellArchitect Script
TeamMacLean/pileup-processor
TeamMacLean/scinteg
TeamMacLean/summer_school_2017
Materials etc for sharing with participants of the summer school
TeamMacLean/AcapellaStomataMeasurer
PerkinElmer Acapella Script for Stomata Detection from FLEX files
TeamMacLean/bioinformatics-site
TeamMacLean/doclok
TeamMacLean/easy_paml
A pipeline for find synonymous and non-synonymous amino acid changes in the proteins.
TeamMacLean/exome_capture_snp_call
Pipeline to call SNPs from exome capture data
TeamMacLean/fairheas_post_assembly_analysis
TeamMacLean/fastq-check-basic
TeamMacLean/fastq-order
TeamMacLean/kohpahyluht
copilot
TeamMacLean/make_ap
TeamMacLean/opimage_docker
TeamMacLean/opimage_interface
web server front end templates for opimage scripts
TeamMacLean/opimage_things
TeamMacLean/quadplot
TeamMacLean/renseq_snpcall_pipeline
Analysing the renseq enrichment data from bulk susceptible and susceptible parent for SNPs
TeamMacLean/Rgene_NBARC_phylogeny
Phylogeny of R gene with NB-ARC motifs
TeamMacLean/rice-renseq-canu-assembly
Cany assembly of Rice Renseq PacBio data
TeamMacLean/RNAseq_SNP_Caller
TeamMacLean/ruup
Are you up? - Site Uptime.
TeamMacLean/sebastian_smrtlink_hgap_assembly
8 smrtcell sequel data assembly with smrtlink v5
TeamMacLean/Space-Probe
TeamMacLean/summer_school_handbook
Handbook for the 2017 summer school
TeamMacLean/training_req_survey
Results of training requirements survey
TeamMacLean/transmembrane_prediction_and_curation
Predict transmembrane start and end positions and then curation of transmembrane motifs