Pinned Repositories
atacr
Analysing Capture Seq Count Data
blastjs
a BLAST+ wrapper for Node.js
blastjs-demo
documentation
List of repos that constitute team documentation
how_to_create_repo_names
Format for naming new repos
Merit
A web app for serving Mozilla Badges build on top of Play Framework 2
snpFC
Filter and compare SNPs from multiple VCF files
software_projects
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
stomatameasurer
Stomata detection from TIFF fluorescence images of leaves
sugarnet
Sugar Net
Team MacLean Bioinformatics's Repositories
TeamMacLean/SynBioShop
TeamMacLean/candisnp
code for candiSNP web tool
TeamMacLean/NCM_NT_1705_22022023_PHOS_SITE_CONS
Phospho site conservation in Fungi
TeamMacLean/pepdiff
tools for working with peptide quantification Mass Spec data
TeamMacLean/proThrow
TeamMacLean/documentation
List of repos that constitute team documentation
TeamMacLean/software_projects
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
TeamMacLean/af_interaction_screen
Tools for running a GMI style Alpha Fold interaction screen on the HPC
TeamMacLean/basic_alignment
A minimal guide to performing read alignment against a reference
TeamMacLean/besthr
Generating Bootstrap Estimation Distributions of HR Data
TeamMacLean/buscadoR
Annotating LRR-RP and LRR-RK proteins
TeamMacLean/buscador_hlp
files for use in buscador colab
TeamMacLean/GRAND_Code
TeamMacLean/images.tsl.ac.uk
TeamMacLean/intro-shell-cmd-line
Short introduction to the Shell command line
TeamMacLean/komondor-api
TeamMacLean/komondor-web
TeamMacLean/mogo
R package for easy GO analysis of M.oryzae gene lists.
TeamMacLean/mutate_RE_sites
Change the restriction sites in nucleotide sequences such that it does not change amino acid sequence.
TeamMacLean/nlrsnake
snakemake pipeline for running NLRtracker.R on TSL HPC
TeamMacLean/PD_PRO_1499_06122021_PRM2
This repo contains PRM analysis of _Magnaporthe oryzae_ strains _Guy11_ vs _dpmk1_.
TeamMacLean/peppwR
What the Package Does (One Line, Title Case)
TeamMacLean/ScintegForm
Scinteg 2.0
TeamMacLean/software
TeamMacLean/tracking
Code for tracking object movement in image collections
TeamMacLean/transplant
TeamMacLean/transplantform
Improved Transplant site
TeamMacLean/tsl-metagenomics-analysis-workshop
TSL version of the Carpentries Style Metagenomics Analysis Workshop
TeamMacLean/tsl-shell-genomics
Introduction to shell genomics adapted from the Data Carpentries for TSL.
TeamMacLean/tsl-wrangling-genomics
Wrangling and processing data for genomics adapted from the Data Carpentries for TSL.