Pinned Repositories
atacr
Analysing Capture Seq Count Data
blastjs
a BLAST+ wrapper for Node.js
blastjs-demo
documentation
List of repos that constitute team documentation
how_to_create_repo_names
Format for naming new repos
Merit
A web app for serving Mozilla Badges build on top of Play Framework 2
snpFC
Filter and compare SNPs from multiple VCF files
software_projects
Lists of repos that are software projects, R packages, and generally tools rather than analysis results
stomatameasurer
Stomata detection from TIFF fluorescence images of leaves
sugarnet
Sugar Net
Team MacLean Bioinformatics's Repositories
TeamMacLean/blastjs
a BLAST+ wrapper for Node.js
TeamMacLean/snpFC
Filter and compare SNPs from multiple VCF files
TeamMacLean/synonymous_nonsynonymous_snp_analysis
Using blast output, check the mismatch is synonymous or non synonymous
TeamMacLean/taxLookup
TeamMacLean/AgRenSeq_GLM
TeamMacLean/blast_n_top_hits
Gets user specified number of blast top hits
TeamMacLean/cheripic
a ruby tools to pick causative mutation from bulks segregant sequencing
TeamMacLean/cheripicapp
TeamMacLean/codon_switch_using_max_probability_value
Nucleic codon switching to new codon coding same amino acide with max probability value
TeamMacLean/corgi
internal site usage tracking
TeamMacLean/data.tsl.ac.uk
TeamMacLean/datahog2
TeamMacLean/filter_genes_by_domain_names
Filtering out genes with certain domain names
TeamMacLean/fluorpeaks
Dealing with fluorescence peak data
TeamMacLean/irida
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
TeamMacLean/kamoun_image_analysis_tools
Image analysis tools for Kamoun group
TeamMacLean/komondor-project
TeamMacLean/LiveStats
TeamMacLean/msa_to_dnds
Multiple Sequence Alignment of gene sequences and run PAML to get pair wise dN/dS
TeamMacLean/mutations_hts_noref
Repository comprising data and analysis about arrange contigs based on allele frequency
TeamMacLean/pacbio_readlength_distribution
Plot readlength distribution
TeamMacLean/Simulated_Reads_Assembly_Comparison
Comparison of assembly of reads generated by simulation
TeamMacLean/smrtlink_barcode_demultiplex_ccs
Demultiplexing Sequel raw data in BAM format using sample barcodes
TeamMacLean/smrtlink_demultiplex_CCS
Demultiplex sample specific barcoded subread set to generate Consensus (CCS) reads.
TeamMacLean/throsten_nanopore_polishing
Nanopore data assembly polishing
TeamMacLean/tsl-bioinformatics-fab
TeamMacLean/uptime
TeamMacLean/uptime-service
TeamMacLean/web-executioner
Command executioner via web POST
TeamMacLean/xiaolin_smrtlink_demultiplex
Sequel data demultiplexing