TheJacksonLaboratory/Picky

Issues

• How to change the format of output (.xls) to .bed?

  #14 opened 6 years ago by LinXialab
  0

• Will Picky identify intragenic rearrangements?

  #13 opened 6 years ago by wolfgangrumpf
  0

• sam2align missing in the zip and tar.gz files for download

  #12 opened 6 years ago by sonderkar
  0

• Picky get fewer SV counts than sniffles when use minimap2 do the alignment

  #11 opened 6 years ago by PengJia6
  0

• use Minimap2 aligner

  #8 opened 6 years ago by tgong1
  5

• output xls and vcf file

  #10 opened 6 years ago by tgong1
  0

• Can't use an undefined value as an ARRAY reference at callSV.pm

  #9 opened 6 years ago by javijevi
  2

• Feature request: write bam rather than sam

  #7 opened 7 years ago by wdecoster
  0

• Bug: hg19.lastdb and hg19.seq.dict hardcoded in callSV.pm

  #6 opened 7 years ago by wdecoster
  0

• Feature request: check return codes of LAST, validate input in bash script

  #5 opened 7 years ago by wdecoster
  0

• Can't locate hashFastq.pm in @INC if using symlink

  #3 opened 7 years ago by wdecoster
  0

• Feature request: support compressed fastq input

  #4 opened 7 years ago by wdecoster
  0

• Any way to rank the output SVs?

  #2 opened 7 years ago by cytham
  1

• bioconda recipe

  #1 opened 7 years ago by wdecoster
  2