TlaskalV

TlaskalV's Stars

• SnapDrop/snapdrop

  A Progressive Web App for local file sharing

  Language:JavaScript18.6k1904921.7k

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python97035145173

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python960107175

• EmilHvitfeldt/paletteer

  🎨🎨🎨 Collection of most color palettes in a single R package

  Language:R9471713746

• elbersb/tidylog

  Tidylog provides feedback about dplyr and tidyr operations. It provides wrapper functions for the most common functions, such as filter, mutate, select, and group_by, and provides detailed output for joins.

  Language:R58995825

• burghoff/Scientific-Inkscape

  Scientific Inkscape: Inkscape extensions for figure resizing and editing

  Language:Python54781821

• oscarbaruffa/BigBookofR

  The biggest collection of R books (and maybe later some other resources too)

  Language:HTML54512383161

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4621424857

• LKremer/ggpointdensity

  :chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

  Language:R41761826

• bedops/bedops

  :microscope: BEDOPS: high-performance genomic feature operations

  Language:C3031627360

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python25173438

• Pakillo/grateful

  Facilitate citation of R packages

  Language:R230104618

• najoshi/sickle

  Windowed Adaptive Trimming for fastq files using quality

  Language:C218203395

• linnabrown/run_dbcan

  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

  Language:Python148715840

• DiltheyLab/MetaMaps

  Long-read metagenomic analysis

  Language:Perl10067623

• ciannabp/inauguration

  A color palette inspired by the 2021 inauguration

  Language:R95312

• rhysnewell/aviary

  A hybrid assembly and MAG recovery pipeline (and more!)

  Language:Python85512313

• AstrobioMike/bit

  Bioinformatics Tools

  Language:Python8162612

• bpbond/srdb

  Global soil respiration database

  Language:R54108734

• jkaupp/nord

  ArcticIce Studios nord, and northern inspired palettes from the Group of Seven.

  Language:R51614

• tseemann/samclip

  Filter SAM file for soft and hard clipped alignments

  Language:Perl4631710

• rrwick/Bacterial-genome-assemblies-with-multiplex-MinION-sequencing

  Language:Shell33929

• fkeck/rleafmap

  Interactive maps with R and Leaflet

  Language:R24684

• M-Reimer/togglereferrer

  Toggle Referrer Add-on for Firefox

  Language:JavaScript123174

• moyn413/nifHdada2

  dada2 formatted nifH database

  Language:R11333

• nickp60/riboSeed

  pipeline for using ribosomal flanking regions to improve bacterial genome assembly

  Language:Python88112

• wwood/hmmer-rs

  Ergonomic Rust interface to HMMER

  Language:Rust6331

• jsta/cond2sal_shiny

  Shiny app to convert conductivity to salinity

  Language:R4102

• chrisquince/PenrynTutorial

  Metagenomics tutorials for Penryn symposium

  Language:Python3203

• nickp60/plentyofbugs

  Find your sequenced isolate an compatable reference genome based on location, interests, and average nucleotide identity

  Language:Python2201