Victorian-Bioinformatics-Consortium/degust

Issues

• Fatal error: cannot create 'R_TempDir'

  #56 opened 3 years ago by carolineneof
  1

• How to modify MDS plots (95% confidence intervals, etc)

  #55 opened 4 years ago by bkramer88
  0

• degust analysis- How long does it take?

  #54 opened 6 years ago by mahdieh1370
  1

• shift+click on blocks of samples in Configure menu

  #53 opened 7 years ago by avilella
  0

• problems uploading large csv files to website

  #52 opened 7 years ago by avilella
  3

• is there a way to export the MDS plot as an svg image?

  #51 opened 8 years ago by avilella
  1

• graphics - counts (y axis) disapears from gene counts graph.

  #42 opened 8 years ago by AMChalkie
  1

• Duplicate instance declarations error

  #9 opened 8 years ago by Bjoernsen
  6

• R packaged limma not found

  #10 opened 8 years ago by Bjoernsen
  2

• Enhancement: download CSV static link

  #39 opened 8 years ago by colindaven
  1

• Enhancement: Keeping track of input files

  #40 opened 8 years ago by AMChalkie
  1

• Enhancement: make clear that degust-old webpage is the old one

  #49 opened 8 years ago by AnnaSyme
  1

• Error handing for incorrectly-specified conditions/replicates

  #48 opened 8 years ago by AnnaSyme
  1

• csv import error on beta website

  #47 opened 8 years ago by avilella
  3

• problems uploading csv

  #45 opened 8 years ago by avilella
  8

• Error handling CSV with space after a comma.

  #46 opened 8 years ago by drpowell
  1

• Add methods description to ODF export

  #44 opened 8 years ago by AMChalkie
  0

• MDS is not a PCA nor SVD

  #43 opened 8 years ago by amackey
  3

• graphics - in the way of gene counts

  #41 opened 8 years ago by AMChalkie
  0

• Export differential expression results as ODF format

  #33 opened 8 years ago by AMChalkie
  8

• Enhancement: QC: Find outliers

  #36 opened 8 years ago by AMChalkie
  1

• NA in csv produces a data point without name and description

  #38 opened 8 years ago by AMChalkie
  1

• Enhancement: QC: sex genes

  #37 opened 8 years ago by AMChalkie
  0

• Enhancement: Plot all values for a selected gene / publication ready figure

  #34 opened 8 years ago by AMChalkie
  5

• Bug ? Counts used as fold changes

  #24 opened 8 years ago by colindaven
  4

• Cannot view data from configuration window

  #31 opened 8 years ago by JakeGoodall
  1

• Hover on table to show in heatmap

  #6 opened 8 years ago by drpowell
  1

• Generate "print" quality diagrams

  #8 opened 11 years ago by drpowell
  2

• Feature request: export counts-per-million

  #17 opened 8 years ago by colindaven
  1

• values off scale (below minimum on Avg Expression)

  #19 opened 10 years ago by AMChalkie
  2

• Sort KEGG pathways by name

  #26 opened 8 years ago by AMChalkie
  1

• Export cpm in R table output

  #29 opened 8 years ago by AMChalkie
  1

• line limit?

  #35 opened 8 years ago by macmanes
  1

• Auto set width of "Genes" table columns?

  #32 opened 9 years ago by tseemann
  0

• http://www.vicbioinformatics.com/degust/ server down?

  #30 opened 9 years ago by AMChalkie
  1

• Wishlist: Upload from .gct file

  #28 opened 9 years ago by AMChalkie
  0

• cabal keeps saying packages not installed though they are indeed there

  #27 opened 9 years ago by n6151h
  3

• Request: Add sample weighting

  #25 opened 9 years ago by AMChalkie
  7

• Wishlist: package necessary css offline

  #23 opened 10 years ago by AMChalkie
  1

• build-tests.sh fail with a type error on OSX

  #22 opened 10 years ago by vixr
  3

• Export .gmt

  #21 opened 10 years ago by AMChalkie
  0

• Need Help for Degust Tool

  #20 opened 10 years ago by rahdayal
  2

• Use KEGG GMT files from MolSigDB to automatically match gene/KEGG pathway relationships

  #18 opened 10 years ago by AMChalkie
  1

• Wrong file name 'r_functions.hs'

  #16 opened 10 years ago by Bjoernsen
  1

• convert_models.py script failed on Ensembl gff3 file

  #14 opened 11 years ago by lmanchon
  1

• Wishlist: Display average intensity in table

  #12 opened 11 years ago by pfh
  2

• Wishlist: Configurable axis labels and units

  #13 opened 11 years ago by pfh
  0

• Disable Heatmap clustering

  #11 opened 11 years ago by Bjoernsen
  2

• Configurable link from gene table

  #5 opened 11 years ago by drpowell
  1

• Embed parameters in URL

  #7 opened 11 years ago by drpowell
  0