Pinned Repositories
anndata
Annotated data.
scanpy
Single-cell analysis in Python. Scales to >1M cells.
cellrank
CellRank: dynamics from multi-view single-cell data
scvelo
RNA Velocity generalized through dynamical modeling
anndata
Annotated data.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
convertx
word-to-html/json (for the EnduringWord commentary)
CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
curved-quivers
Matplotlib function to represent a vector field with path-following arrows
docs
PrestaShop technical documentation
VolkerBergen's Repositories
VolkerBergen/convertx
word-to-html/json (for the EnduringWord commentary)
VolkerBergen/anndata
Annotated data.
VolkerBergen/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
VolkerBergen/CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
VolkerBergen/curved-quivers
Matplotlib function to represent a vector field with path-following arrows
VolkerBergen/docs
PrestaShop technical documentation
VolkerBergen/gammapy
A Python package for gamma-ray astronomy
VolkerBergen/jira
Python JIRA Library is the easiest way to automate JIRA. Support for py27 was dropped on 2019-10-14, do not raise bugs related to it. Show that you care about the future of the library by donating $1, is not about the money!
VolkerBergen/kipoi
Kipoi's model zoo API
VolkerBergen/knowledge-repo
A next-generation curated knowledge sharing platform for data scientists and other technical professions.
VolkerBergen/loompy
Python implementation of the Loom file format - http://loompy.org
VolkerBergen/MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
VolkerBergen/MLBox
MLBox is a powerful Automated Machine Learning python library.
VolkerBergen/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
VolkerBergen/modAL
A modular active learning framework for Python3
VolkerBergen/nbsphinx
:ledger: Sphinx source parser for Jupyter notebooks
VolkerBergen/numpy
The fundamental package for scientific computing with Python.
VolkerBergen/pepy
pepy is a site to get statistics information about any Python package.
VolkerBergen/population-diffusions
Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"
VolkerBergen/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
VolkerBergen/scanpy-tutorials
Scanpy Tutorials.
VolkerBergen/scanpy_usage
Scanpy use cases.
VolkerBergen/scvelo
RNA Velocity generalized through dynamical modeling
VolkerBergen/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
VolkerBergen/sphinx-nbexamples
Create an examples gallery with sphinx from Jupyter Notebooks
VolkerBergen/ti_paga_tree