Weeks-UNC/shapemapper2

Issues

• Modular Workflow: Error while loading shared libraries: libboost_filesystem.so.1.81.0

  #56 opened 10 days ago by Adele-Mangelinck
  0

• Component "Interleaver" (sample:Modified) failed

  #55 opened 2 months ago by Li-Li-RNA
  1

• Shapemapper2_dmsmode_fastq_format_error

  #54 opened 2 months ago by gunjangunjan22
  2

• How to extract reads with specific base mutations?

  #53 opened 2 months ago by GDemon486
  5

• Histogram PDFs do not accurately represent mutation rate statistics if a target sequence longer than the amplicon is provided

  #52 opened 5 months ago by jwaldern
  1

• nanoSHAPE

  #51 opened 5 months ago by legbar
  0

• ERROR: Component "BowtieIndexBuilder" failed

  #50 opened 7 months ago by yinglin1202
  0

• Output reactivity for entire transcriptome

  #47 opened a year ago by reislab
  4

• High percentage of unpaired reads in alignment

  #49 opened 10 months ago by Shashankti
  4

• maximum recursion depth exceeded while calling a Python object

  #48 opened a year ago by doudou0908
  0

• Nextera prep + random primer

  #22 opened a year ago by samcho
  7

• 'RuntimeError: Error: input data lengths do not all match.' in the CalcProfile step

  #35 opened a year ago by eumhh
  5

• workflow runs very slow

  #36 opened a year ago by AMA-cs
  5

• problem with sequence corrector

  #37 opened a year ago by irinatu
  2

• QC reliability

  #42 opened a year ago by AMA-cs
  5

• Access to 2.2 update

  #45 opened a year ago by catherine-douds
  1

• Reactivity profile calculation for two samples (Modified & Untreated)

  #43 opened a year ago by Valentine022
  1

• masking the primers in shape reactivity profile

  #41 opened 2 years ago by gunjangunjan22
  4

• Shapemapper2 installation issue on oracle linux

  #40 opened 2 years ago by GunjanVasudeva22
  1

• Low alignment percentage

  #39 opened 2 years ago by herber4
  1

• Raw fastq files processing

  #38 opened 2 years ago by angelika888
  9

• mate pairs not detected as paired.

  #32 opened 2 years ago by yoonsquared
  7

• ShapeMapper run failed while MutationCounter_modified

  #29 opened 2 years ago by amkilar
  4

• Profile figure is not created for long sequence with no error.

  #34 opened 2 years ago by Psirving
  0

• mutation_counter formatting

  #33 opened 2 years ago by catherine-douds
  1

• ShapeMapper using PACBIO

  #27 opened 2 years ago by dksenthil
  1

• Mapped reads from amplicon wokflow - Error

  #30 opened 2 years ago by angelika888
  20

• not understandable Error message about primers

  #31 opened 2 years ago by irinatu
  4

• Sequence corrector error

  #28 opened 2 years ago by jodyphelan
  2

• Component "Tab6Interleaver" (sample:Modified) failed

  #26 opened 3 years ago by SooLee
  1

• FileNotFoundError: [Errno 2] No such file or directory

  #25 opened 3 years ago by rotruebchen
  1

• Error: must provide at least one target sequence

  #14 opened 4 years ago by s-t-calus
  15

• SRA download - fastq format isse

  #10 opened 5 years ago by SawyerHicks
  0

• Mutation_parser

  #23 opened 3 years ago by yx04
  3

• ShapeMapper2 stops calculations

  #15 opened 4 years ago by angelika888
  4

• OS/pipeline troubles

  #20 opened 4 years ago by benoahb
  2

• an advice please

  #21 opened 4 years ago by tanasa
  4

• Should the target sequence always be transcriptome sequence?

  #19 opened 4 years ago by uaauaguga
  2

• bbmap 38.x version :: error

  #18 opened 4 years ago by EricDeveaud
  0

• DeprecationWarning: 'U' mode is deprecated

  #17 opened 4 years ago by EricDeveaud
  0

• superfold software

  #16 opened 4 years ago by eoziolor
  2

• BrokenPipeError

  #12 opened 5 years ago by wcantara
  4

• Read issue with SRA data from GEO Accession GSM3994935

  #13 opened 5 years ago by afafbioinfo
  4

• memory error

  #11 opened 5 years ago by xfliu1995
  4

• SuperFold

  #7 opened 5 years ago by xfliu1995
  3

• `--min-mutation-separation 0` behavior does not match expectations

  #4 opened 5 years ago by shapemapper
  1

• add link to shapemapper-txome

  #5 opened 5 years ago by shapemapper
  1

• Unhelpful error message when R1 fastq missing

  #6 opened 5 years ago by shapemapper
  1

• --separate-ambig-counts passed to wrong executable

  #8 opened 5 years ago by shapemapper
  1

• expose aligner effort options

  #9 opened 5 years ago by shapemapper
  1