WhoIsJack
Systems biologist studying the principles of self-organization at the interface of cell and developmental biology.
University College LondonLondon, United Kingdom
WhoIsJack's Stars
scikit-learn/scikit-learn
scikit-learn: machine learning in Python
geomstats/geomstats
Computations and statistics on manifolds with geometric structures.
brainglobe/brainrender
a python based software for visualization of neuroanatomical and morphological data.
scverse/spatialdata
An open and interoperable data framework for spatial omics data
saezlab/liana
LIANA: a LIgand-receptor ANalysis frAmework
dpeerlab/spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
zeiss-microscopy/OAD
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
pyxu-org/pyxu
Modular and scalable computational imaging in Python with GPU/out-of-core computing.
Octoframes/jupyter_compare_view
Blend Between Multiple Images in JupyterLab.
AlexBuz/mindsweeper
A principled take on minesweeper
tataratat/splinepy
Library for prototyping spline geometries of arbitrary dimensions and degrees, and IGA
multiview-stitcher/multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
JaneliaSciComp/xarray-multiscale
scalable multiscale image pyramids in python
VasylVaskivskyi/microaligner
Image registration (alignment) software for large microscopy images
AllenCell/aics-shparam
GrotjahnLab/surface_morphometrics
Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
kreshuklab/MorphoFeatures
MorphoFeatures code and data
TheDeanLab/navigate
navigate - open source light-sheet microscope controls
multiview-stitcher/napari-stitcher
A napari plugin for stitching of large datasets
mobie/mobie-utils-python
Python tools for MoBIE
astro-informatics/sleplet
Slepian Scale-Discretised Wavelets in Python
DaetwylerStephan/selfdriving-multiscale-imaging
This repository contains the software to run a self-driving, multi-scale microscope and tools to process and analyse the resulting data.
borgesaugusto/forsys
A tissue stress and cell pressure inference package with dynamical information
borgesaugusto/seapipy
API for creating Surface Evolver files with python
labowitz/motifs
Repository for "Combinatorial expression motifs in signaling pathways" paper by Granados, Kanrar, Elowitz (2023).
phcreery/surface_curvature
saeyslab/ViVAE_old
Autoencoder-based models for dimension reduction of high-dimensional cytometry and single-cell RNA-seq data based on geometry and nearest-neighbour relations
saeyslab/ViScore
Unsupervised benchmarking and supervised explanatory evaluation measures for dimensionality reduction of single-cell data
textX/textx-playground
Playground for textX https://textx.github.io/textx-playground/
raible-lab/neuromast3d
Code for the 3d neuromast cell and nuclear shape project