a-h-b/binny

Issues

• snakemake.exceptions.CreateCondaEnvironmentException

  #63 opened 2 months ago by MiracleEaTu
  5

• Prokka's file writing problem

  #62 opened 4 months ago by Andyargueasae
  3

• OSError: [Errno 39] Directory not empty: '/work/home/songbing/.cache/snakemake/snakemake/source-cache/runtime-cache/tmp9x52c7qu'

  #61 opened 8 months ago by B1991ing
  1

• Module not found error for pandas

  #59 opened 9 months ago by Andyargueasae
  5

• non-zero exit status 1

  #60 opened 9 months ago by B1991ing
  3

• InstallError

  #58 opened a year ago by B1991ing
  17

• Sometimes indexerror

  #55 opened 9 months ago by Andyargueasae
  0

• Depth calculation with the use of megahit

  #56 opened a year ago by Andyargueasae
  1

• Error: Network unreachable

  #57 opened a year ago by tfaitova1
  1

• Failed to initiate the conda environment.

  #54 opened a year ago by Andyargueasae
  6

• Binny has no bin produced for assembly with plastid contigs

  #53 opened a year ago by Andyargueasae
  0

• Error to finish testrun

  #47 opened a year ago by 0819shumpeitakeuchi
  12

• After adding plastid markers, binny process errors

  #52 opened a year ago by Andyargueasae
  1

• Test run processing id error

  #50 opened a year ago by Andyargueasae
  0

• Error in test run

  #48 opened a year ago by Andyargueasae
  6

• About changing database from default to customized

  #51 opened a year ago by Andyargueasae
  0

• Binny step is slow and use a lot of RAM in large dataset

  #44 opened 2 years ago by kingtom2016
  6

• Batch job submission failed: Requested node configuration is not available

  #46 opened 2 years ago by Nathhub
  3

• No bin file after analysis

  #45 opened 2 years ago by ywangbioinfo
  5

• Trying to produce bins

  #41 opened 2 years ago by jp589
  9

• Test run completes, throws warnings and produces no bins

  #40 opened 2 years ago by btemperton
  2

• Calling binny within an existing snakemake pipeline

  #39 opened 2 years ago by EisenRa
  2

• [nltk_data] Error

  #37 opened 2 years ago by joeyclancy
  14

• Issue with TESTRUN

  #38 opened 2 years ago by jp589
  2

• Duplicate output file pattern in rule prepare_input_data

  #36 opened 2 years ago by palomo11
  2

• Numpy error: libgfortran.so.5: invalid ELF header

  #35 opened 2 years ago by palomo11
  2

• Workflow running error

  #23 opened 3 years ago by JaphethLin
  5

• Errors when `6) Initialize conda environments:`

  #24 opened 3 years ago by Hocnonsense
  4

• ModuleNotFoundError: No module named 'conda._vendor.auxlib'

  #28 opened 3 years ago by B-1991-ing
  105

• Setting of multiple bam files of the IDBAUD co-assembly contig.fa

  #33 opened 3 years ago by B-1991-ing
  2

• Running binny in the PBS like system

  #27 opened 3 years ago by B-1991-ing
  0

• Question on the installation of binny

  #26 opened 3 years ago by B-1991-ing
  15

• Multiple bam files from co-assembly?

  #19 opened 3 years ago by sjaenick
  3

• checkm_tf & checkm_pf

  #22 opened 3 years ago by JaphethLin
  4

• document config file

  #2 opened 3 years ago by a-h-b
  0